Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04377 ATGGAGGCAAGTAGTATTTCTGATGGCACAGGAACACCTCTATTAGTGCTAACTGATGATAATAGAAAACAGAACACAGAACCTCAAACAGAGAAATGGTGGAACAAAGTATTGGACATAGAGGAAACAAAACATCAGCTCATGTTTTCACTACCAATGATTCTTacaaacttattttattatttgataacTTTAGTTTCTGTGATGCTTGTTGGTCACCTTGGTGAGCTTCGGTTAGCTGGTGCTACTCTTGCTAATTCTTGGTATAGTGTCACTGGTGTGGCTGTCATGGTTGGTTTAAGTGGTGCACTGGAAACACTGTGTGGACAAGGATTTGGTGCAAAGGAATATCACATGTTGGGAATTTATCTACAAGGCTCATGCATTATATCTTTCATCTTTTCTATCATTATATCAATTATTTGGTTACATACAGAACACATTCTGGTGTTACTTCATCAATCACATGACATTGCTAGAACAGCTGCACTCTATATGAAGTTTCTCATACCAGGATTATTTGCATATAGCATCTTGCAAAACTTGTTGAGGTTTTTACAGACACAATCTATAGTGATGCCATTGGTTATTCTTTCAGCTATTCCAGCATTAGTTCATGTTGGAATTGCATATGGATTTGTTGAATGGACAAGTTTGAATTTCATAGGTGGACCAATTGCAACATCTATTTCACTGTGGATATCAATGATAATGTTAGGACTATATGTTATGTATGCAAAGAAGTTTGAGAATACATGGAGAGGATTTTCAATGCAATCATTTCATTATCTGCTTACAAATATCAAACTAGCTTTGCCCTCTGCAGCAATGGTATGtTTGGAGATGTGGGCTTTTCAAGTCTTGGTTTTCTTAGCTGGATTAATGCCTGACTCACAAATAACAACTTCATTGATTGCAATATGTGCAAACACAGAATTCATTGCTTACATGATCACTTATGGTCTTAGTGCTGCTGCAAGCACAAGGGTATCCAATGAACTAGGGGCAGGCCAACCAGAAAGAGCTAAACATGCAATGAGAGTGACTCTAAAGCTCTCTATCCTCCTtggtttctgttttgttttgatactttTATTTGGTCATGATATATGGATTGGACTGTTCAGTAATAGTCCTATTATCAGAAAGGAGTTTGCTTCAATAACACCATTGCTTGCTATTTCCATACTACTAGATTCTATCCAAGGTGTCTTATCAGGGGTGGCTAGAGGATGTGGTTGGCAGCACTTAGCTGTTTATGTCAACCTTACAACTTTTTATCTCATTGGTTTGCCAATTTCATGTCTCCTTGGATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTAATTTGTGGTCTGGTGTGTCAAACCGGGACTCTCTTACTTTTAACAAGGCATGCCAAATGGACTAAACTGAATCTCTCCGGGGACAAAGATAAAGGCCAACCTATTGTAGTTTAA 1470 0.3687 MEASSISDGTGTPLLVLTDDNRKQNTEPQTEKWWNKVLDIEETKHQLMFSLPMILTNLFYYLITLVSVMLVGHLGELRLAGATLANSWYSVTGVAVMVGLSGALETLCGQGFGAKEYHMLGIYLQGSCIISFIFSIIISIIWLHTEHILVLLHQSHDIARTAALYMKFLIPGLFAYSILQNLLRFLQTQSIVMPLVILSAIPALVHVGIAYGFVEWTSLNFIGGPIATSISLWISMIMLGLYVMYAKKFENTWRGFSMQSFHYLLTNIKLALPSAAMVCLEMWAFQVLVFLAGLMPDSQITTSLIAICANTEFIAYMITYGLSAAASTRVSNELGAGQPERAKHAMRVTLKLSILLGFCFVLILLFGHDIWIGLFSNSPIIRKEFASITPLLAISILLDSIQGVLSGVARGCGWQHLAVYVNLTTFYLIGLPISCLLGFKTNLQYKGLWIGLICGLVCQTGTLLLLTRHAKWTKLNLSGDKDKGQPIVV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04377 489 Pfam MatE 52 211 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04377 489 Pfam MatE 273 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04377 489 PANTHER PROTEIN DETOXIFICATION 23 483 - -
Tsu02g04377 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 483 - -
Tsu02g04377 489 CDD MATE_eukaryotic 42 474 IPR045069 GO:0042910|GO:1990961
Tsu02g04377 489 TIGRFAM matE: MATE efflux family protein 52 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04377 489 MobiDBLite consensus disorder prediction 1 28 - -
Tsu02g04377 489 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04377 Tsu-Chr2 52457765 52461167 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04377 K03327 - gmx:100816310 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04377 02 52457765 52461167 Tsu02g04377 02 52457765 52461167 ECH