Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04333 ATGAGAAACATTAATACAAAAGCATTATGCTTcacaattttctttctttctatagTATCATCATCAATTCATGTTCAATGTCGTTCTCTTCCAAATGAATTGATTTCAAATGgagttgatgatgatgttcaATCATCACAACAAGATTCTTTTCTActtcttaataataatactagtaaCAAATTTGAATCTTCAAATTCAGAACAGTATTGTAAACAAATGTATGGTTTTTTACCATGTTCTAATAACATTTTTGGTCACCTATTTTTGATTTTGGTGTATGAGTATTTATTGTTCCATGGAGAATCATATTTGGCTGCTGGAGGTGAACAAATTTTCAAGATTATGGGTCCAGGTGTTTTTGGTGCTAGTGCTTTTGATATTCTTGGTGCTCTTCCAGAATCCTTAATTCTTCTTGTAACTGGACTTTCAAGTGATAAGGAGAGTGCACAAGAATATGCTTCAACTGGTGTTGGTTTGTTAGCTGGATCATCCATCTTGCTTCTTACTGTAGTGTGGGGAACTTGTGTTATTGTTGGcaaacaaaacttgaaaaatGATTCTAGTTCTGTTGCCTCATATTCATCTACAGAAAGAATAAAACAATCTTTGATTGGTTATGGGATTACTATGGATGTAGACACTAGAAAGATGGCAAGAATCATGGTTTTCTCTATTATACCACTTCTCATAATGCAGATTCCTACATTATTCAATTTCTCTACAAAATTACGCAATGTTACTTTAATGATTTCTCTCATCATTGCTGTCACTTTTCTCATCTCATACTTCATTTACCAGATATTTAAACCTCAAATAGAGAAAACAAGATTAGAATACATAAAGCATGACGACTTAATATTAAGAATTTTCCAACGCGTTGAAAAGCAAACTCTCCAAAAAATCCTAGCTGAGGATGGAACTCCTAATGTAACTGCCATAAGCGGGTTATATAGTGAATTCAGTCAACGCGGGGAAAGTCATTTATCAGCTTCTGAAGTAAGAGAGCTTTTGCTTGGGAACAATTTAACCGGCACAAATATCAGGGAGGAACAAATAACTGATATGTTAAAagtttttgacaaaaatggTGATCAAATTATAACCAAGGAAGAATTTGTTAATGGCTTAACAGAATACATTAACCAAACAAAGCATGCTTTGGATAGACAATATCTCCCCAAACAATCTATGAACAAAATGTATCAGGCTTTTATCAAGCCTTGGATTGAACACATGAGAAAAGAACGTGCGTTGAAGGGACATCTTATTTCGGGAGTTTTAGATCATGCTCAGAGTGATATGGTTGGTAGATTGCGCAAAGATGACGGTACACCTGATAAAGATGCTATCAAAAGGTTGTTTGAGGAAGTCGATAGTGATGGCAATAACAATGTTTCGAGGTCCGAACTAGAAAAAATAGTGAAAGAGATTCATTTTGGCAAGTCTGTAGATTCAGACGAAGCAGTCACAAAACTACTTCATGATCTTGATGTCAACAAAGACGATGAAATTAGTGAAAATGAATTTGTTGACGGCTTCACAAAATGGTTAAACTCAAATTCTAGTCAAGCTGCTAGCTCAAAATCACCTTCTCATCATGAACCTCATCAAGTATTTTCCTTATTCCTATACTCAAATAACTTGCAATGTACAATTTTTCTAATGCTTAAGTGTTATTTTTTATCTACATTTTCACTGATTTGCGACTTTGATTCGGCTATTTTTGTGTATTAG 1737 0.3241 MRNINTKALCFTIFFLSIVSSSIHVQCRSLPNELISNGVDDDVQSSQQDSFLLLNNNTSNKFESSNSEQYCKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLAAGGEQIFKIMGPGVFGASAFDILGALPESLILLVTGLSSDKESAQEYASTGVGLLAGSSILLLTVVWGTCVIVGKQNLKNDSSSVASYSSTERIKQSLIGYGITMDVDTRKMARIMVFSIIPLLIMQIPTLFNFSTKLRNVTLMISLIIAVTFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVTAISGLYSEFSQRGESHLSASEVRELLLGNNLTGTNIREEQITDMLKVFDKNGDQIITKEEFVNGLTEYINQTKHALDRQYLPKQSMNKMYQAFIKPWIEHMRKERALKGHLISGVLDHAQSDMVGRLRKDDGTPDKDAIKRLFEEVDSDGNNNVSRSELEKIVKEIHFGKSVDSDEAVTKLLHDLDVNKDDEISENEFVDGFTKWLNSNSSQAASSKSPSHHEPHQVFSLFLYSNNLQCTIFLMLKCYFLSTFSLICDFDSAIFVY 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04333 578 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 401 530 - -
Tsu02g04333 578 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 12 396 - -
Tsu02g04333 578 Gene3D - 308 386 - -
Tsu02g04333 578 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Tsu02g04333 578 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Tsu02g04333 578 SUPERFAMILY EF-hand 319 518 IPR011992 -
Tsu02g04333 578 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Tsu02g04333 578 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Tsu02g04333 578 CDD EFh 451 515 IPR002048 GO:0005509
Tsu02g04333 578 Gene3D - 387 528 - -
Tsu02g04333 578 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Tsu02g04333 578 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Tsu02g04333 578 SMART efh_1 352 380 IPR002048 GO:0005509
Tsu02g04333 578 SMART efh_1 450 478 IPR002048 GO:0005509
Tsu02g04333 578 SMART efh_1 489 517 IPR002048 GO:0005509
Tsu02g04333 578 Pfam EF-hand domain pair 449 512 IPR002048 GO:0005509
Tsu02g04333 578 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 401 530 - -
Tsu02g04333 578 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 12 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04333 Tsu-Chr2 51915215 51921217 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04333 401 528 EF-hand Containing Proteins AT1G53210 36.434 7.06e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04333 - - gmx:100799062 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04333 02 51915215 51921217 Tsu02g04333 02 51915215 51921217 ECH