Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04323 atgtctcTCTCTTTCACTTCCCCTCCCCGTTCCCGCCGGCGAAACCACCGCACACCGTTCCTCTTCCTTTTCCTCGGCATAATCACAATCCTCTTTTCTCAATCTCACGCTCGCTTATTTACTCGCGATCTAATCTCCGATGGTTCTAACTATCTCCGTCTTCCAACAGATTTACCTCTTCAAGGAGAAGAATCCACCTGTGAACAAACCTACGGTTTCTTACCATGCACCACTACCGTTTTCGGTAACTTGTTCCTCATTATTGTCTATGGATTCCTCATGTATACTGCTGCTACTTTCTTATCTAATGGTAGTGAACTCTTGCTTGAGATCTTGGGTCCTGGCATTGTTGGTGGCTTGTTTCTTCCTATTCTCGGTGCTCTCCCTGATGCCATGCTCATTCTCGTATCTGGGCTTTCAGGAAGTCCCGAAGTTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGATCAACAGTGCTGCTTCTCACTATAATATGGGGGACTTGTGTAATTGTAGGCAAGTGTGACATTGAGGATTCAATTGCATTAGATTCAACAGACACTAGGGGATTCAGTTTAACTgGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGATTATATCTGTCATTCCATTTTTGATTGTTCAATTACCACAGATTCTCCATTCAACTTCTGGAAGGCACTTGGCtgttttgattggttttgttGTCTCTGTCTGTTTGTTGATCTCTTATTGCCTTTACCagATTTTCCAGCCCTGGATACAAAGGAGAAAACTAGAATATATTAAACACAAGCATGTTATAGTGGGACTTTTGAGACATTTGAAGATGCGTTCATTGGGAAGGCTGCTAAATGATGATGGTACACCGAATAAAGAAGTAATTAAAAAGTTGTTTGCAACCATTGATGAAAATAAAGATGGTCATCTTACTCATGGTGAAATGACAGCACTAGTTGTTGGAATTCAATTTGAGGAGATTGACTTGGAGCATGATGATGCTGTGAGAAGAATAATGGCAGATTTCGATACTTCTCGTAATCAACttattgatgaagaagaatttgtTAATGGAGTCTGTAGATGGCTTCAAACAGCAAAGCGTTCTCGTGCTCCAGCTGGTGATGCTGGTCCACACACTGTGAAGtttttaagtgattttcacaCAGAAACAAAGAGGGAACACGATCTTCTGGATGTTGGGGGTCAGAGTGATGAAGTCTCTGAGGGTGTAGAGAATGCTAAATGGATTTCTATCAAAGCAGGATTATTCCTGTTACTGGGTTCTCTTATTGCTGCTGCATTTGCTGATCCTTTGGTTGATGTAGTTGATAACTTTTCTGACGCTACAAGTATTCCAGCTTTCTtcatttcctttatttttctacCTCTTGCAACGAATTCAAGTGAAGCAGTATCAGCAATTATTTTTGCTAGTCGTGACAAGAGGCAAACAGCATCATTAACATTTTCTgagATATATGGTGCAGTAACGATGAACAATGTGCTATGTCTATCAGTCTTCTTGGCGCTCGTATATGTGAGGGGATTGACATGGGACTTTTCTTCAGAAGTGTTGGTTATTCTCATTGTTTGCATTGTCATGGGTGCCTTCGCCAGTTTCCGCACGGTTTTCCCTCTATGGACATCAATACTAGCTATCCTGCTTTATCCTTTCTCCCTGGCATTGGTCTATGTTCTTGATTATCAATTTGGGTGGTCATAG 1755 0.3983 MSLSFTSPPRSRRRNHRTPFLFLFLGIITILFSQSHARLFTRDLISDGSNYLRLPTDLPLQGEESTCEQTYGFLPCTTTVFGNLFLIIVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSPEVAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIALDSTDTRGFSLTGSGVSTDIWTSYAARIMIISVIPFLIVQLPQILHSTSGRHLAVLIGFVVSVCLLISYCLYQIFQPWIQRRKLEYIKHKHVIVGLLRHLKMRSLGRLLNDDGTPNKEVIKKLFATIDENKDGHLTHGEMTALVVGIQFEEIDLEHDDAVRRIMADFDTSRNQLIDEEEFVNGVCRWLQTAKRSRAPAGDAGPHTVKFLSDFHTETKREHDLLDVGGQSDEVSEGVENAKWISIKAGLFLLLGSLIAAAFADPLVDVVDNFSDATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGAFASFRTVFPLWTSILAILLYPFSLALVYVLDYQFGWS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04323 584 Gene3D - 257 384 - -
Tsu02g04323 584 ProSiteProfiles EF-hand calcium-binding domain profile. 300 335 IPR002048 GO:0005509
Tsu02g04323 584 Gene3D - 420 578 IPR044880 -
Tsu02g04323 584 Pfam Sodium/calcium exchanger protein 85 261 IPR004837 GO:0016021|GO:0055085
Tsu02g04323 584 Pfam Sodium/calcium exchanger protein 433 575 IPR004837 GO:0016021|GO:0055085
Tsu02g04323 584 CDD EFh 305 369 IPR002048 GO:0005509
Tsu02g04323 584 Pfam EF-hand domain pair 302 367 IPR002048 GO:0005509
Tsu02g04323 584 SUPERFAMILY EF-hand 300 373 IPR011992 -
Tsu02g04323 584 ProSiteProfiles EF-hand calcium-binding domain profile. 340 375 IPR002048 GO:0005509
Tsu02g04323 584 ProSitePatterns EF-hand calcium-binding domain. 313 325 IPR018247 -
Tsu02g04323 584 SMART efh_1 304 332 IPR002048 GO:0005509
Tsu02g04323 584 SMART efh_1 344 372 IPR002048 GO:0005509
Tsu02g04323 584 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 29 581 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tsu02g04323 584 ProSitePatterns EF-hand calcium-binding domain. 353 365 IPR018247 -
Tsu02g04323 584 PANTHER SODIUM/CALCIUM EXCHANGER NCL 29 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04323 Tsu-Chr2 51785023 51790836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04323 43 584 EF-hand Containing Proteins AT1G53210 67.877 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04323 - - gmx:100809896 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04323 02 51785023 51790836 Tsu02g04323 02 51785023 51790836 ECH