Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04287 ATGGCaaacaaaatggaaaaaatggCATCAATTGATGCACAGCTTAGACAATTAGTACCAGCAAAAGTTAGTGAAGATGATAAACTTATTGAGTATGATGCTTTGTTGTTGGATCGATTTCTTGATATTCTTCAGGATTTACATGGAGAGGATCTGAAAGATTCTGTTCAAGAAGTGTATGAACTTTCTGCGGAGTATGAAAGAAAGCACGATCCTAAGAAACTTGAAGAACTTGGAAATTTGATAACAAGTTTAGATGCAGGAGATTCAATTGTTGTTGCTAAGTCCTTTTCGCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTTCAGATTGCTCATCGCCGAAGAAACAAGTTGAAGAAAGGAGATTTTAGGGATGAGAGCAATGCAACTACCGAATCAGACATCGAAGAAACTCTCAAGAGACTTGTGTTTAACATGAAGAAGTCTCCCCAGGAAGTTTTTGATGCATTGAAGAACCAGACCGTTGATCTGGTTCTTACTGCTCATCCTACTCAGTCGGTTCGTAGATCATTGCTTCAAAAGCATGCAAGGGTAAGGAACTGTTTATCCCAATTGTATGCTAAAGACATCACTCCTGATGATAAGCAAGAGCTCGATGAAGCTCTCCAGAGGGAGATTCAAGCTGCATTCCGTACCGATGAAATCAAGAGGACACCTCCAACACCACAAGATGAGATGAGAGCAGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTCCCTAAATTTCTTCGCCGTGTTGATACTGCGTTGAAGAACATAGGGATTAACGAACGTGTTCCCTATAATGCTCCTCTTATTCAGTTTTCTTCTTGGATGGGGGGCGATCGTGATGGTAATCCAAGAGTGACTCCTGAAGTGACGAGAGATGTTTGCTTACTCGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATTGAAGATCTTATGTTTGAActGTCTATGTGGCGTTGCAATGATGAGCTACGTGATCGCGCAGAAGAACTTCACAGGAATTCCAAGAAAGATGAAGTTGCAAAACACTACATAGaattttggaaaaaaattccTTTGAATGAACCGTACCGTGTTATACTTGGTGATGTAAGGGACAAGCTCTATCGTACTCGTGAGCGGTCTCGTTATCTTCTAGCTCATGGCTATTCTGAAATTCCTGAAGAAGCCACATTCACCAATGTTGACGAGTTCTTGGAACCTCTTGAACTATGCTACAGATCACTCTGTGCTTGTGGTGATCGTGCGATTGCCGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTTTCCACTTTTGGACTGTCACTGGTAAGACTTGATATTAGGCAAGAGTCAGATCGTCACACGGATGTGATGGATGCCATTACCAAACATTTGGAAATTGGCTCTTACCAAGAATGGTCTGAAGAAAAAAGACAGGAATGGCTTTTGTCTGAGTTGGTTGGCAAAAGGCCGCTTTTTGGACCTGACCTACCACAAACCGATGAAATTAGAGAAGTTTTGGAGACATTTCATGTCATAGCAGAACTTCCATCAGACAACTTTGGAGCCTATATCATTTCGATGGCAACTGCTCCATCTGATGTGCTGGCGGTTGAACTTCTTCAACGTGAATGCAAAATCAAGAATCCGTTAAGAGTCGTTCCGTTGTTTGAGAAACTTGCTGATCTTGAGTCTGCTCCTGCTGCTTTGGCTCGGTTGTTTTCGATAGACTGGTACATAAACCGGATCCATGGGAAGCAAGAAGTTATGATTGGATATTCTGATTCTGGTAAAGACGCTGGAAGGTTTTCTGCAGCATGGCAGCTATATAAGGCTCAGGAGGACCTCATAAAGGTTGCTCAGAAATTCGGTGTTAAGCTAACAATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCatcttgctatcttgtctcaacCACCAGATACAATTCACGGATCGCTTCGTGTGACAGTTCAAGGTGAAGTTATTGAACAGTCGTTCGGAGAGGAGCACTTGTGCTTTAGAACGCTGCAACGTTTCACTGCTGCCACCCTAGAACATGGAATGCGTCCCCCAAGTTCTCCAAAACCAGAATGGCGTGCATTGATGGATCAAATGGCTGTCATTGCTACCGAGGAGTACCGTTCAATTGTGTTCAAGGAACCACGCTTTGTTGAGTATTTCCGTCTGGCTACACCAGAGATGGAGTACGGAAGGATGAACATTGGAAGTCGACCGGCAAAGAGAAGGCCTAGTGGAGGCATTGAAACACTGCGTGCTATACCGTGGATTTTTGCATGGACACAGACAAGGTTTCATCTTCCAGTATGGCTAGGCTTTGGAGCAGCTTTTAAACAAGTTGTTGCGAAGGATGTTAAGAATCTTCAAATGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTTGAAATGGTGTTCGCTAAGGGTGACCCTGGTATTGCAGCACTGAATGATAGGCTCCTAGTTTCACAGGATCTGTGGCCATTTGGTGAACAGTTGAGGAACAAATATGAAGAAACTAAGAAACTCCTTCTTCAGGTGGCTACACACAAGGAAGTTCTTGAAGGAGATCCCTACTTGAAACAAAGACTCAGACTCCGTGATTCTTACATTACAACCCTTAACGTTTTCCAAGCTTACACGTTGAAACGGATCCGTGATCCAAACTATAAGGTGGAGGTGCGTCCCCACGTATCGAAAGAGTCTGCTGAAACAAGTAAATCCGCCGATGAACTTGTAACATTGAATCCAACAAGTGAATATGCTCCTGGTTTAGAAGACACACTCATTCTCACCATGAAGGGTATTGCTGCTGGCATGCAGAACACCGGTTAA 2901 0.4257 MANKMEKMASIDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDSVQEVYELSAEYERKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFRDESNATTESDIEETLKRLVFNMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARVRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRDRAEELHRNSKKDEVAKHYIEFWKKIPLNEPYRVILGDVRDKLYRTRERSRYLLAHGYSEIPEEATFTNVDEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELVGKRPLFGPDLPQTDEIREVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECKIKNPLRVVPLFEKLADLESAPAALARLFSIDWYINRIHGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAQKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVVAKDVKNLQMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSQDLWPFGEQLRNKYEETKKLLLQVATHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYKVEVRPHVSKESAETSKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04287 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
Tsu02g04287 966 Pfam Phosphoenolpyruvate carboxylase 34 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 166 179 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 219 235 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 279 294 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 PRINTS Phosphoenolpyruvate carboxylase signature 764 790 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 Gene3D Phosphoenolpyruvate/pyruvate domain 307 444 - -
Tsu02g04287 966 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 32 966 IPR015813 GO:0003824
Tsu02g04287 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 966 - -
Tsu02g04287 966 Coils Coil 330 350 - -
Tsu02g04287 966 Coils Coil 103 123 - -
Tsu02g04287 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 22 966 IPR022805 GO:0006099|GO:0008964|GO:0015977
Tsu02g04287 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 167 178 IPR018129 -
Tsu02g04287 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04287 Tsu-Chr2 51104720 51110005 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04287 K01595 - gmx:100805069 1782.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04287 02 51104720 51110005 Tsu02g04287 02 51104720 51110005 ECH