Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04272 ATGGAAACCATCCCTACTTCTATCAACAGTGGTTTGGGATGGAAATCATCTTCCTTCTTTCAACATTCCAATTTCTTCAACCTACTTTCTCATCCTTTCAAACCAAAACCCTCTCTTTCCAAGTTTTCTCTCACTTGCTCTGCAACCTCTTCTTCTTCTGatCCTCTCTTGGTTCAGGCTGCCAGGGGAGATCTTGTTAGTCGCCCTCCAGCATGGATGATGCGTCAGGCAGGAAGGTACATGGCTGCTTACCAAAAGTTAGCTCAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTTAGGCCCGATGGAGTGATTATATTCTCTGACATCCTAACACCTCTACCTGCATTTGGAATTAACTTTGACATAGAAGATGTAAAAGGACCTGTAATACAGTCACCTGTCCGCTCCGAGGATGGATTAAAGGTTTTGCACCCAATTGACTTCGATAAACTTAGATTTGTAGGAGAATCACTTAAGATTCTACGGCAAGAGGTTGGTGGTGATGCTGCTGTTTTAGGTTTTGTGGGGGCACCATGGACATTGGCAACATATATAGTAGAAGGAGGTACAACACGCACATATACAAACATTAAGAGCATGTGTCATACAGCACCACACATACTGAAGAGTCTACTTTCTCATTTGACAAAGGCGATAGCAGATTACATCGTTTTCCAAGTGGAATCTGGGGCTCACTGTATACAAATATTTGATTCGTGGGGTGGACAACTACCGCCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGTCCGGAGACACCACTTGTTCTATATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGGTAGATACCGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATATGGCTgatggaagaagaagattgGGTAGCGGGATTGGCGTGCAAGGAAATGTGGATCCTGCTTACTTATTCTCTCCTCTTAATGCTTTGACAGAAGAAATTCAAAGGGTTGTGAGGTGTGCGGGACCTAGACGACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGAAGTTCGACACTCTCACTCAAAATAACACTGCAAATGTAGCTTAA 1221 0.4275 METIPTSINSGLGWKSSSFFQHSNFFNLLSHPFKPKPSLSKFSLTCSATSSSSDPLLVQAARGDLVSRPPAWMMRQAGRYMAAYQKLAQKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGINFDIEDVKGPVIQSPVRSEDGLKVLHPIDFDKLRFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTNIKSMCHTAPHILKSLLSHLTKAIADYIVFQVESGAHCIQIFDSWGGQLPPDMWERWSKPYIKEIVNLVKKKCPETPLVLYINGNGGLLERMVDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLNALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTLTQNNTANVA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04272 406 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 70 79 IPR000257 GO:0004853|GO:0006779
Tsu02g04272 406 Hamap Uroporphyrinogen decarboxylase [hemE]. 53 393 IPR006361 GO:0004853|GO:0006779
Tsu02g04272 406 Gene3D - 46 394 IPR038071 -
Tsu02g04272 406 Pfam Uroporphyrinogen decarboxylase (URO-D) 56 391 IPR000257 GO:0004853|GO:0006779
Tsu02g04272 406 SUPERFAMILY UROD/MetE-like 56 392 IPR038071 -
Tsu02g04272 406 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 35 403 - -
Tsu02g04272 406 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 189 205 IPR000257 GO:0004853|GO:0006779
Tsu02g04272 406 TIGRFAM hemE: uroporphyrinogen decarboxylase 57 390 IPR006361 GO:0004853|GO:0006779
Tsu02g04272 406 CDD URO-D 59 391 IPR006361 GO:0004853|GO:0006779
Tsu02g04272 406 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 35 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04272 Tsu-Chr2 50832354 50836535 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04272 K01599 - gmx:100807032 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04272 02 50832354 50836535 Tsu02g04272 02 50832354 50836535 ECH