Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04160 ATGGCAACACATACCCCAAAAAATATCCTGATTACCGGGGCAGCCGGATTCATTGCATCTCATGTTGCCAACCGGCTAATCCGGAATTATCCCGACTACAAGATTGTTGTGCTCGACAAACTTGATTACTGTTCTAATCTGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGAGACATTGCAAGTGCTGATCTTGTCAACTATCTTCTGATTACCGAGTCTATCGACACAATTATGCACTTTGCTGCTCAAACTCATGTTGACAACTCTTTCGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCTTATTAGAAGCCTGCAAGGTAACAGGACAGATCAAAAGGTTCATCCATGTTAGCACTGACGAGGTCTATGGAGAGACAGATGAGGATGCCGTTGTTGGAAACCATGAAGCTTCTCAGCTACTTCCAACAAATCCATACTCTGCAACTAAAGCTGGGGCGGAAATGCTTGTCATGGCCTATGGTAGGTCGTATGGACTGCCTGTGATCACAACACGTGGAAACAATGTCTATGGCCCGAACCAGTTTCCTGAAAAGCTAAttccaaagttcatcctctTGGCAATGCAAGGCAAAGTTCTTCCTATTCATGGTGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAACTTATCCTTCATAAGGGAGAGGTTGGACATGTTTACAATATTGGAACAAAGAAGGAAAGGCGCGTTATTGATGTAGCCACAGATATATGCCGACTCTTCTCGATAGATCCAGAGactaatataaaatttgtagAGAACAGACCGTTTAATGACCAGAGATACTTTCTTGACGACCAAAAGTTGAAGGTTTTGGGTTGGTCGGAGAGAACAACGTGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTATATCAACAATCCTAATTGGTGGGGTGATGTGAGCGGTGCATTGCTTCCTCATCCAAGGATGTTGATGATGCCTGGTGGTATGGAGAGACATTTCGACGGATCTGAAGAAGAAAATTCTGCAACATATGTCTCAAATACGAATACTCGAATGGTGGTTCCACCAACCAAGAACCTTGGCTCATCGCAGAAACCTCCTCTCAAGTTCTTGATCTATGGCAGAACTGGTTGGATCGGTGGTCTGTTGGGGAAACTGTGTGAGAAGCAAGGGATTCCTTATGAGTATGGAAAAGGGCGCCTTGAGGATCGTTCATCACTTGTGGCTGATATTCAGAACGTGAAGCCAACTCATATTTTCAATGCAGCAGGAGTGACCGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACTGAAACCATCCGTGTCAACGTTGCTGGGACTTTAACATTGGCTGATGTAAGCAGAGAGCATGACCTTTTGATGATAAACTATGCTACTGGATGCATATTCGAGTACGATGAAGCTCATCCAGAAGGTTCAGGCATTGGTTTTAAGGAGGAAGACACGCCTAATTTCCATGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAAAGAATATGACAATGTATGCACTCTTAGGGTTCGCATGCCGATATCATCCGACCTAAGCAATCCGCGTAACTTCATCACCAAGATTTCGCGTTACAACAAAGTAGTTAATATTCCAAACAGCATGACTATTTTGGATGAACTTCTTCCTATTTCAATTGAGATGGCAAAGAGGAACTTAAGGGGTATCTGGAACTTCACAAATCCTGGCGCTGTGAGTCACAACGAAATTCTCGAGATGTACAGGGATTACATTGATCCAAACTTCAAGTGGGCTAACTTCACACTTGACGAGCAAGCCAAAGTGATAGTTGCTGCAAGAAGCAACAATGAAATGGATGCATCCAAATTGAAGAGTGAGTTTCCAGAATTGCTTTCCATCAAGGAATCACTTATCAAGAATGTCTTTGAGCCAAACAAGAAAAGTGcttaa 2013 0.4183 MATHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKVLPIHGDGSNVRSYLYCEDVAEAFELILHKGEVGHVYNIGTKKERRVIDVATDICRLFSIDPETNIKFVENRPFNDQRYFLDDQKLKVLGWSERTTWEEGLKKTMDWYINNPNWWGDVSGALLPHPRMLMMPGGMERHFDGSEEENSATYVSNTNTRMVVPPTKNLGSSQKPPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRVNVAGTLTLADVSREHDLLMINYATGCIFEYDEAHPEGSGIGFKEEDTPNFHGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWANFTLDEQAKVIVAARSNNEMDASKLKSEFPELLSIKESLIKNVFEPNKKSA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04160 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Tsu02g04160 670 CDD dTDP_HR_like_SDR_e 386 658 - -
Tsu02g04160 670 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Tsu02g04160 670 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 667 - -
Tsu02g04160 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 379 656 IPR036291 -
Tsu02g04160 670 Gene3D - 376 670 - -
Tsu02g04160 670 Gene3D - 9 313 - -
Tsu02g04160 670 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Tsu02g04160 670 Gene3D - 200 322 - -
Tsu02g04160 670 PANTHER BNAC05G13120D PROTEIN 2 667 - -
Tsu02g04160 670 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04160 Tsu-Chr2 48837485 48841290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04160 8 324 Miscellaneous Gene Families AT4G00110 27.434 6.07e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04160 K12450 - gmx:100789909 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04160 02 48837485 48841290 Tsu02g04160 02 48837485 48841290 ECH