Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04145 ATGCAAAGTCTAACAATGAATCAAACAGCGCTTTCACAACCAAACCATTGGTACCAAACAAatcaaccaaacacaaacagtttcacaaaaaatccaatccaatttcTTCGATTCCGCCAAAACGACAAGCAAAATCTCCAACTCTTGCGTTTCGCCTTAAACCCTTCATCACAGGTTCCACCGGTCGTCGTTGTTGGATCCGCCAATGCCGATATCTATGTTGAGCTTGACCGACTTCCGAAAGAAGGCGAAACGATTTCCGCAAAAAGCGGACAGACTTTAGCCGGCGGGAAAGGTGCTAATCAAGCTTGCTGCGGTGCTAAATTATCACATCCAACTTACTTCATCGGTCAGGTTGGAAATGATGCTCATGGAAACCTCCTTGCCGATGCTCTCCGTGATGGTGGCGTTCGCCTTGATTATCTCACCGTTGTGCCTTCTGCTCCGACTGGTCATGCTGTTGTTATGCTTCAGTCTAGTGGCCAAAATTCTATTGTCATTGTTGGTGGTGCTAATATGAGTTGTTGGCCTCAGAGTCTGCCACCTCAGCATTTGGAGGTTATTACATCGGCTGGGATTGTCATGTTGCAGAGGGAGATTCCTGATTTTATTAATGTTCAAGTGGCAAAGGCTGCATGGAATGCTGGTGTCCCAGTAATATTTGATGCTGGGGGAATAGATGCACCAATTCCACAAGAATTACTGGGTTTTGTCGATATTTTTAGTCCTAATGAAAGTGAACTTGCTCGCCTTACAGGACTGCCGACTGAAAGTTTTGAAGAGATTACACAGGCTGCTGTGAGATGCCATAAATTGGGAGTTGAGCAAGTTCTTGTGAAACTTGGTTCCAAAGGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAGCAACCTGCCATCTTTGCTAAAACAGTCATTGATACAACTGGAGCTGGCGATACTTTTACAGCTGCTTTTGCTGTAGCCTTTGTGGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGCTGCTGCAGCTTCTCTTTGTGTTCAAGTCAAGGGAGCTATTCCCAGTATGCCGGATAGGAAATCTGTTCTTGAACTTCTTAATCATCATTGA 1104 0.4339 MQSLTMNQTALSQPNHWYQTNQPNTNSFTKNPIQFLRFRQNDKQNLQLLRFALNPSSQVPPVVVVGSANADIYVELDRLPKEGETISAKSGQTLAGGKGANQACCGAKLSHPTYFIGQVGNDAHGNLLADALRDGGVRLDYLTVVPSAPTGHAVVMLQSSGQNSIVIVGGANMSCWPQSLPPQHLEVITSAGIVMLQREIPDFINVQVAKAAWNAGVPVIFDAGGIDAPIPQELLGFVDIFSPNESELARLTGLPTESFEEITQAAVRCHKLGVEQVLVKLGSKGSALFIEGEEPIQQPAIFAKTVIDTTGAGDTFTAAFAVAFVEGKSKKECLRFAAAAASLCVQVKGAIPSMPDRKSVLELLNHH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04145 367 Pfam pfkB family carbohydrate kinase 62 356 IPR011611 -
Tsu02g04145 367 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 96 120 IPR002173 GO:0016773
Tsu02g04145 367 Gene3D - 59 366 IPR029056 -
Tsu02g04145 367 PRINTS Ribokinase signature 64 85 IPR002139 GO:0016301
Tsu02g04145 367 PRINTS Ribokinase signature 91 110 IPR002139 GO:0016301
Tsu02g04145 367 PRINTS Ribokinase signature 163 176 IPR002139 GO:0016301
Tsu02g04145 367 PRINTS Ribokinase signature 233 248 IPR002139 GO:0016301
Tsu02g04145 367 PRINTS Ribokinase signature 277 288 IPR002139 GO:0016301
Tsu02g04145 367 SUPERFAMILY Ribokinase-like 61 364 IPR029056 -
Tsu02g04145 367 Hamap Ribokinase [rbsK]. 60 362 IPR011877 GO:0004747|GO:0006014
Tsu02g04145 367 CDD ribokinase 66 356 IPR011877 GO:0004747|GO:0006014
Tsu02g04145 367 PANTHER SUGAR KINASE 60 367 - -
Tsu02g04145 367 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 308 321 IPR002173 GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04145 Tsu-Chr2 48623973 48628813 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04145 K00852 - gmx:100801418 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04145 02 48623973 48628813 Tsu02g04145 02 48623973 48628813 ECH