Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03692 ATGGCTCCAATTCCGTCTGAGAACGGCGTCGATGGAGACGATGAacgagaagaggaagaagacgaagaagaagaagatgacgaagaagaagttgaagatGACGAAGAAGAGCCTAGACTCAAGTATCAGAGAATGGGAGGAAGCGTACCTTCGTTGTTAGCTACTGATGCGGCGTCGTGTGTGGCGGTTGCGGAACGGATGATCGCTCTTGGTACTCAAGCTGGTACCATTCATATCCTTGATTTTCTTGGGAATCAGGTGAAAGAATTCTCTGCCCATGCATCTGTTGTGAATGACCTTAGCTTTGACTTAGAAGGGGAATATATTGGAAGCTGTTCTGATGATGGATCCGTTGTTATAAACAGTCTTTTTACTGATGAGGTAATGAAATTTGAGTACCATCGACCAATGAAGGCGGTTGCTTTGGACCCTGATTATGCAAGGAAAATGTCTAGGAGGTTTATTACTGGTGGTTTAGCtggtaatttatatttaaattcgAAGAAATGGTTGGGCTATCGGGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCGGCGAATAACATTTATCGAAAGACCACGAGGGTGCCCACACCCTGAGCTTTTGGTTCCTCACTTGGTTTGGCAGGATGACACCGTCTTAGTTATCGGCTGGGGAACATCAGTCAAAATTGCCTCAATAAGGACAAATCACCATAAAGCCACCAATGGGGTGTACATGCAAGTTCCTGTGCTTGGTATGACCCAGGTGGATATTGTAGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCCCCTTTTGGTGATTCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGAAAATGGAGATAAGGATTTTAGTAGCACAGTTCCTTCACGGCAGGGTAATGCACAAAGACCTGAAGTAAGAGTAGTGACATGGACTAATGATGAACTTTCAACAGATGCTCTACCAGTACACGGGTTTGAGCATTACAAGGCAAATGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGCGGTCAGTGGGCTGCAGGCGATGAACCACTATACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGACCATATTGCTTGGCTTCTTCAACATGGATGCCATGAAAAAGCTTTAGCTGTGGTTGAATCTGGTCAGGGACGCAGTGAACTACGTGATGAGGTGGGATCTAGGTACCTTGATCATCTGAttgttgaaagaaaatatggtgAAGCAGCTTCTTTGTGTCCCAAGTTACTGCGAGGGTCAGCTTCGGCATGGGAGAGATGGGTCTTCCACTTTGCACATCTGCGTCAACTCCCTGTTTTGGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTGGCTCTTGTTGCATTGGCTACAAATCCATCTTTCCATAAGGATCTCTTATCCGCTGTAAAATCCTGGCCGCCTGTAATATACTCTGCGTTACCTGTTATTTCAGCCATTGAACCACAGCTAAATACTTCGTCCATGACTGATTCACTCAAGGAGGCATTAGCGGAGTTGTATGTAATTGATGGGCAATATGAGAAAGCCTACTCATTGTATGCAGATCTTATGAAGCCAGAAgtatttgattttattgataaacaTAACCTACATGATGTAATTCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTATATCCAGAATAGAGAATTAATAAGTCCACCAGAGGTTGTGAAGCAACTTCTAAATGCCAAAAACAAGTCTGATTGCagatattttttacatttatatctCCATTCACTGTTTGAAGTAAATCCACATGCTGGGAGAGATTTCCATGATATGCAGGTAGAACTTTATGCAGACTATGATCCAAAGATGCTGCTACCTTTCCTTCGTAGCAGTCAACACTATACCCTTGAGAAGGCTTATGAAATTTGCATCAAAAGAGACTTAATGAGAGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACGCCAAAAAAGCCCTAGCtgttattataaacaaattggGGGATATAGAGGAgGCTGTAGAGTTTGTTACCATGCAGCATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAGATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGACCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGCTCAGGGATCGGCTAGTTAAAATTATCACTGATTACAGGACAGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAgGCGGATTGTGTCAATCTTTTAGTTAAGTATCACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAACGAAGAAGATGAGCCAAGAGTTAATATGAGTGATAATCGTGCCTCTCAAGCATTTGAGAAATCCCTAAGTCTGAGAACGATGGAGATGAAGTCAAAGACTAGGGGAGGGGGAAGATGTTGTATATGTTTTGACCCATTTTTTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCACGGATTCGTACTACACTACTAGTAGCACAAAAGAGATTCAACCGACTTCCAAAGAGGCAGAAACATATGATGATTACAATGGTTATGCGGATGATGCCAgcgatgaaaatgaagaagaaaccaAGTCGGATGGTCCTCGTATGCGTTGTATTTTGTGTACTACTGCTGCTGGTTGA 2871 0.4065 MAPIPSENGVDGDDEREEEEDEEEEDDEEEVEDDEEEPRLKYQRMGGSVPSLLATDAASCVAVAERMIALGTQAGTIHILDFLGNQVKEFSAHASVVNDLSFDLEGEYIGSCSDDGSVVINSLFTDEVMKFEYHRPMKAVALDPDYARKMSRRFITGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDRRITFIERPRGCPHPELLVPHLVWQDDTVLVIGWGTSVKIASIRTNHHKATNGVYMQVPVLGMTQVDIVASFQTSYFISGLAPFGDSLVVLAYIPGEENGDKDFSSTVPSRQGNAQRPEVRVVTWTNDELSTDALPVHGFEHYKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGCHEKALAVVESGQGRSELRDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSAVKSWPPVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAYSLYADLMKPEVFDFIDKHNLHDVIQEKVVQLMMLDCKRAVPLYIQNRELISPPEVVKQLLNAKNKSDCRYFLHLYLHSLFEVNPHAGRDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYHKEARHGISLGNEEDEPRVNMSDNRASQAFEKSLSLRTMEMKSKTRGGGRCCICFDPFFIQNVSVIVFFCCHGYHTTCLTDSYYTTSSTKEIQPTSKEAETYDDYNGYADDASDENEEETKSDGPRMRCILCTTAAG 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03692 956 Coils Coil 17 37 - -
Tsu02g03692 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 956 IPR045111 GO:0006623
Tsu02g03692 956 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Tsu02g03692 956 MobiDBLite consensus disorder prediction 11 36 - -
Tsu02g03692 956 SMART WD40_4 83 122 IPR001680 GO:0005515
Tsu02g03692 956 SMART WD40_4 171 207 IPR001680 GO:0005515
Tsu02g03692 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Tsu02g03692 956 Gene3D - 8 270 IPR015943 GO:0005515
Tsu02g03692 956 SUPERFAMILY WD40 repeat-like 55 262 IPR036322 GO:0005515
Tsu02g03692 956 SMART ring_2 870 951 IPR001841 -
Tsu02g03692 956 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 956 - -
Tsu02g03692 956 Pfam Region in Clathrin and VPS 611 752 IPR000547 GO:0006886|GO:0016192
Tsu02g03692 956 Gene3D Tetratricopeptide repeat domain 545 813 IPR011990 GO:0005515
Tsu02g03692 956 MobiDBLite consensus disorder prediction 908 943 - -
Tsu02g03692 956 MobiDBLite consensus disorder prediction 1 44 - -
Tsu02g03692 956 PIRSF Vps41 1 911 IPR016902 GO:0034058|GO:0046907
Tsu02g03692 956 SUPERFAMILY RING/U-box 863 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03692 Tsu-Chr2 41643915 41655405 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03692 K20184 - gmx:100804340 1728.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03692 02 41643915 41655405 Tsu02g03692 02 41643915 41655405 ECH