Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03678 ATGGCACTCTCAgctttatcaacaacaacaacactttCAAACAGATCTCCAAATCCCATTCTCTTTTCATCATtcacaaaaaaatcacaatttttgacaaaacaaaCAAGACCCAGAAATAGAAAGAACTTTTCACTAACAGTTAGAAGCGTTGCAGCACCACCCACAAAAACTGAACCAAATCAATCCCCAGAAGTTGAAAGGAACGAAATtgatgaagaatttgatgaTGAGAGTTCATCCTCTAAGTTTTCATGGAGAGATCATTGGTACCCAATTTCTTTAATTGAAGATCTGAATCCTAGTTTGCCTACGCCGTTTCAGCTTCTGGGTCGTGAAATTGTGCTTTGGTTTGATAATTCCAATTCTCAATGGGTTGCTTTTGATGATAAATGTCCTCACCGTCTTGCCCCTTTATCTGAAGGAAGGATAGATGAGGGTGGAAACTTGCAATGTTCTTATCATGGATGGTCTTTTGATGGGCGTGGAGGTTGTGTTGTGATTCCTCAGGCTTCACCGGAAGGTCCCGAAGCGCGCGCTGTTGGGTCTCCTAGAGCTTGTGCTACTAGGTTTCCTACCTTGGTGTCTCAAGGGTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAATGCATCCAAACCTCCAATGTTGCCTGATGATTTTGTAAAACCAGAGTTTGCGACGGTAAACATTCAGCGCGATCTGTTCTACGGCTACGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGATTTTGCTCATCACAAGGTTACAGGAAGGAGAGATAGAGCGAAGCCTCTTCCATTCAAGATGGATTCACGTGGTCCATGGGGATTTTCAGGAGCTAATGAAGGGAATCCACGGATCAGTTCCAAATTTATTGCACCATGTTATTACATCAACAAgGTTGAGATTGATACCAAACTCCCAATAGTTGGTGACCAGAAATGGGTAATATGGATATGTTCCTTCAATGTCCCCATGTCACCCGGTAAGACTCGCTCCATTGTTTGCAGTGCTCGAAATTTCTTCCAGTTCACAGTTCCAGGTCCTGAATGGTGGAAAGTGGTTCCTAGATGGTATGAACATTGGACTTCAAACAAGGTTTATGATGGAGACATGATTGTCCTTCAAGGTCAAGAGAAAGTATTTCTTGCAGAAACCGAACAAGGCGGCGACATTAACAAACAGTACACAAGCCTCACCTTCACGCCAACACAAGCTGATCGTTTTGTGTTGGCATTTAGAAATTGGCTGAGACGACACGGAAACGGCGAACCCGAATGGTTCACCAAGAGCAGCCAACCATTGCCTTCAACCGTACTATCAAAACGTCAGATGTTGGATAGATTTGAACAACACACACTAAAGTGTTCATCTTGTAAAGGAGCGTACGAGGGATTCAAAACATGGCAGAAAATCCTGATTGGTGCAACAGTTGTGTTTTGTGCAACTTCTGGGATTCCATCAGATATTCAGCTGCGTGTAATTTTGGCCGGACTCGCGGTTGTCAGCGCAGGCTTAGCTTTTGCCGTAAACCGACTAGAAAAGAATTTTGTATTCGTCGATTATGTGCATGCTGAAATCGATTGA 1608 0.4179 MALSALSTTTTLSNRSPNPILFSSFTKKSQFLTKQTRPRNRKNFSLTVRSVAAPPTKTEPNQSPEVERNEIDEEFDDESSSSKFSWRDHWYPISLIEDLNPSLPTPFQLLGREIVLWFDNSNSQWVAFDDKCPHRLAPLSEGRIDEGGNLQCSYHGWSFDGRGGCVVIPQASPEGPEARAVGSPRACATRFPTLVSQGLLFVWPDENGWEKANASKPPMLPDDFVKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDSRGPWGFSGANEGNPRISSKFIAPCYYINKVEIDTKLPIVGDQKWVIWICSFNVPMSPGKTRSIVCSARNFFQFTVPGPEWWKVVPRWYEHWTSNKVYDGDMIVLQGQEKVFLAETEQGGDINKQYTSLTFTPTQADRFVLAFRNWLRRHGNGEPEWFTKSSQPLPSTVLSKRQMLDRFEQHTLKCSSCKGAYEGFKTWQKILIGATVVFCATSGIPSDIQLRVILAGLAVVSAGLAFAVNRLEKNFVFVDYVHAEID 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03678 535 CDD Rieske_RO_Alpha_PaO 73 213 - -
Tsu02g03678 535 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 90 202 IPR017941 GO:0051537
Tsu02g03678 535 Pfam Pheophorbide a oxygenase 298 393 IPR013626 GO:0010277
Tsu02g03678 535 Gene3D - 228 433 - -
Tsu02g03678 535 MobiDBLite consensus disorder prediction 50 78 - -
Tsu02g03678 535 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 8 535 - -
Tsu02g03678 535 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 8 535 - -
Tsu02g03678 535 Pfam Rieske [2Fe-2S] domain 89 173 IPR017941 GO:0051537
Tsu02g03678 535 Gene3D - 85 227 IPR036922 GO:0051537
Tsu02g03678 535 SUPERFAMILY Bet v1-like 197 432 - -
Tsu02g03678 535 SUPERFAMILY ISP domain 83 208 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03678 Tsu-Chr2 41392163 41396329 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03678 K13071 - gmx:100812162 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03678 02 41392163 41396329 Tsu02g03678 02 41392163 41396329 ECH