Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03576 ATGCTAAACCATAAACGACACGTCGTTTTCCTCTCTCTCaccactcttcttcttctctcttcattctctctcactctctgcGAAAAAGCTtctaaaaacaacaacaacgaCGAAGATGAAGAAGATCTCAGTTTCCTTGAAGAACCAGAAGACGCATCAACAAGACACCATAACCATGACAATTTTCCAGATCCCGATCAATTCGAAGACgacgacgaagacggtgaagaCTTCGGCGACGGTGACTTCTCCGGATTTGATCCTAACTCGGAAGAGTTTAAGGAACCAGAAGTGGATGAGAAAgatgttgttgttttgaaggAGAGAAATTTTACAACGgtaattgaaaataataaatttgttatGGTTGAATTCTATGCTCCATGGTGTGGTCATTGTCAAGCTTTGGCTCCGGAGTATGCTGCAGCTGCGACTGAGTTGAAGAACGATGGTGTTGTTTTGGCTAAGGTGGATGCTTCTCAAGAAAATGAATTGGCTCATGAGTATGATGTTCAGGGTTTTCCTACTGTTTACTTTTTCATTGATGGAGTTCATAAACCTTACAATGGCCAAAGAACCAAAGATGGTATAGTGACATGGATTAAGAAGAAGATCGGACCTGGTGTATACAACATAACTACATTGGATGATGCTGAACGCATATTGACCTCGGAAACTAAAGTCGTTTTGGGCTTCCTTGATTCTTTAGttGGTGCTGAGAGTGATGAACTAGCTGCAGCATCAAAACTTGAGGATGGCGTAAATTTTTACCAAACTGTGATTCCTAATGTGGCTAAGCTTTTCCATATTGACCCAGATGTCAAGCGCCCTGCTCTGGTCTTGCTCAAGAAAGAGGAGGAGAAACTGAAccattttgATGGCCAATTTGAAAAAGCTGCAATAGCCAACTTTGTATCCTCCAACAAGCTTCCATTGGTCTCAACTTTTACAAGGGAAAGTGCCCCGGTGATTTTTGAAAGTCCAATCAAGAAACAGTTGTTGCTGTTTGTGACTAAAAATGATACAGCAAAGTTCATTTCAGTATTTCAAGAAGCAGCGAAGTTTTTCAAGGGGAAGCTGGTCTTTGTTCATGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTGCAGATTATTTTGGTATCTCTGGGAATGCTCCCAAAGTACTTGCATTCACAGGAAATGATGATGGCAGAAAATTTTTGCTTGAGGGAGAGGTGACCGTTGACAATATTAAGGCATTTGGAGAAGATTTCCTTGTAGACAAGCTAAAACCTTTCCTCAAGTCAGATCCAATTCCCGAAAGTAATGATGGCGATGTGAAAATAGTTGTTGGCAATAACTTCGACGAAATTGTCTTGGATGAATCGAAGGATGTTCTACTTGAGGTTTATGCTCCCTGGTGTGGCCATTGCCAAGCCTTGGAACCAACATACAACAAGCTAGCAAAACATCTTCGTAGCATTGATTCTATTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCTAGGGCAAAGTCTGATGGGTTCCCTACTCTCCTCTTCTATCCAGCAGGAAAAAAGAGTTCTGACCCTATTACTGTTGATGCGGATCGCACAGTTGTGGCCTTTTACAAGTTCCTCAAGAAACACGCATCAATCCCATTCCAACTCCAGAAACCAACCTCAACTTCTAAAACTGACGATAGTGGGAGTTCTGATGTCAAGGAGAGTCAAAGTAGCAGCACAGATGTGAAGGATGAATTATGA 1755 0.3869 MLNHKRHVVFLSLTTLLLLSSFSLTLCEKASKNNNNDEDEEDLSFLEEPEDASTRHHNHDNFPDPDQFEDDDEDGEDFGDGDFSGFDPNSEEFKEPEVDEKDVVVLKERNFTTVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKNDGVVLAKVDASQENELAHEYDVQGFPTVYFFIDGVHKPYNGQRTKDGIVTWIKKKIGPGVYNITTLDDAERILTSETKVVLGFLDSLVGAESDELAAASKLEDGVNFYQTVIPNVAKLFHIDPDVKRPALVLLKKEEEKLNHFDGQFEKAAIANFVSSNKLPLVSTFTRESAPVIFESPIKKQLLLFVTKNDTAKFISVFQEAAKFFKGKLVFVHVEMDNEDVGKPVADYFGISGNAPKVLAFTGNDDGRKFLLEGEVTVDNIKAFGEDFLVDKLKPFLKSDPIPESNDGDVKIVVGNNFDEIVLDESKDVLLEVYAPWCGHCQALEPTYNKLAKHLRSIDSIVIAKMDGTTNEHPRAKSDGFPTLLFYPAGKKSSDPITVDADRTVVAFYKFLKKHASIPFQLQKPTSTSKTDDSGSSDVKESQSSSTDVKDEL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03576 584 PANTHER PROTEIN DISULFIDE ISOMERASE 2 576 - -
Tsu02g03576 584 Pfam Thioredoxin 441 526 IPR013766 -
Tsu02g03576 584 Pfam Thioredoxin 103 203 IPR013766 -
Tsu02g03576 584 CDD PDI_a_PDI_a'_C 441 543 - -
Tsu02g03576 584 ProSitePatterns Thioredoxin family active site. 122 140 IPR017937 -
Tsu02g03576 584 CDD PDI_a_family 104 201 - -
Tsu02g03576 584 Gene3D Glutaredoxin 435 549 - -
Tsu02g03576 584 ProSitePatterns Thioredoxin family active site. 461 479 IPR017937 -
Tsu02g03576 584 SUPERFAMILY Thioredoxin-like 436 548 IPR036249 -
Tsu02g03576 584 Pfam Thioredoxin-like domain 244 415 - -
Tsu02g03576 584 Gene3D Glutaredoxin 91 205 - -
Tsu02g03576 584 ProSiteProfiles Thioredoxin domain profile. 84 206 IPR013766 -
Tsu02g03576 584 SUPERFAMILY Thioredoxin-like 96 206 IPR036249 -
Tsu02g03576 584 MobiDBLite consensus disorder prediction 65 81 - -
Tsu02g03576 584 TIGRFAM ER_PDI_fam: protein disulfide isomerase 101 584 IPR005792 GO:0003756
Tsu02g03576 584 MobiDBLite consensus disorder prediction 32 99 - -
Tsu02g03576 584 Gene3D Glutaredoxin 310 434 - -
Tsu02g03576 584 PRINTS Thioredoxin family signature 121 129 - -
Tsu02g03576 584 PRINTS Thioredoxin family signature 170 181 - -
Tsu02g03576 584 PRINTS Thioredoxin family signature 129 138 - -
Tsu02g03576 584 CDD PDI_b_family 209 308 - -
Tsu02g03576 584 MobiDBLite consensus disorder prediction 48 64 - -
Tsu02g03576 584 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 576 - -
Tsu02g03576 584 TIGRFAM pdi_dom: protein disulfide-isomerase domain 107 204 IPR005788 GO:0003756
Tsu02g03576 584 ProSiteProfiles Thioredoxin domain profile. 419 548 IPR013766 -
Tsu02g03576 584 Gene3D Glutaredoxin 206 309 - -
Tsu02g03576 584 SUPERFAMILY Thioredoxin-like 209 320 IPR036249 -
Tsu02g03576 584 MobiDBLite consensus disorder prediction 553 584 - -
Tsu02g03576 584 MobiDBLite consensus disorder prediction 553 574 - -
Tsu02g03576 584 SUPERFAMILY Thioredoxin-like 308 438 IPR036249 -
Tsu02g03576 584 CDD PDI_b'_family 320 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03576 Tsu-Chr2 40181249 40186776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03576 K09580 - gmx:100785630 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03576 02 40181249 40186776 Tsu02g03576 02 40181249 40186776 ECH
Tsu02g05077 02 59782942 59786866 Tsu02g03576 02 40181249 40186776 PCT