Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03572 ATGGCGGCGACTCCGGCGAGCGCTAAACTAATTGAAGTCCTACAAACACTCACCGCTCAGGATTCCACTGTAGAATCAAATCCAACGGCTCCACAAGACACACAAATTCAAGAACTAAACGACGACGTTGTAACGACTGATAAAAGGAAAAGAGACGAAACCGACGGAAACGCCGACGCCGATGGAAAGTCTACTCTCCATCCGATGTGGAAGACAAGTCTCTGTTCTTACTTCAGGAAACATGCTTCCTGTAGCCATGGTGATACTTGCCGTTACGCGCATAGCGAAGAGGAGCTTCGGCAACGTCCGGATAATACGTGGGACCCGACGTCGGAGCGAGGGAAAAAGGCTTTGAAAACTGTGACAGGTGAGAAAATTGCTGTTAAAGATGGAGTTATGATGACGGAGCTTGTTGGTGATGATGGTGATGGTGAGGGTGGTGATGATGGTTTTGCATCCAATCAAGCGCTCAGTAAATGTTTAGTGCATTTACCGATGAAATGGAGTTCTGAGAATTTGAGGAATTTCCTCAATGAGCAGGGTATACCTTTTAAGCATGCGAAGACAAAGAAAGGTATGGCAATTGGTTTTGTTACttttgaagatgaagaacaattGAAGAGTTCGTCTAAGGAATTACAAGGAAAACAAATTGGCAACAAAACGTTAGAGGTAGCTGATGTTAATCCTCGATCATTTGAGAAGAAAAGTAACTCTAACGTTCCTTCAAGTGGGACATTGGGTGATGAAACGAATGATGATAATTTGGTAATTGATGGTTCCGAGTCAAAGAAAAAAAGCTCGCGTGAAGTTGTGACTCCTCTGGCGCATTTATCCTATGCTGATCAGTTGGAACAGAAAAAATACTCTCTCATGCAGATTCTCAAAAAACTTCCTAGAAATGCACGTAAAGCTTGTCCAAATGGCGTTCCAGTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTCCCATGCAATCTAGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAATTGGATATTCTATGGAAGGCAAAGCAACAGTGGGCTTCAGCCTTGGAAATTTTAGgGAAGGTGTAACAGCAGTTGAGGAACCAGTGGACTGCCCAAATATTTCTACCATTGCGTGTAAATATGCTGCTATCTTTCAAGAATTTCTGCAGCACACTGATTTACCAATTTGGAACAGATTTAAAAATTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAACGGGAATGTTGTTGATGGTGAAACTTTTGACGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGTTTTGATAATTCACAAGTAGATGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTACAGGAGCTACCTCTCATTGTCCAACTTTACCACTTACAGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCATCTGATGCACCATTGCATTCACTTCCCATAGCAGCTGGTGATCCTGAGAGGGATGTAAATATTAGTGCAGCAGATGTGAGAATCCATGATTATATCAGCAATCTCCGGTTTTCTATATCTCCAACATCATTTTTTCAGGTTAACACACTTGCTGCCGAGAAGTTATACTCCCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTCGATGTATGCTGTGGGACTGGAGCAATTGGCCTGACATTAGCACATCGTGTTGGAATGGTGATTGGAATAGAAATGAACGCTGCTGCTGTATCTGATGCTCATAAGAATGCCGAGAATAATGGCATAAAAAACTGTagatttatttgttcaaagGCAGAGCAAGTTATGGGATCCCTGTTAAAGGAATACCTTGATGTGCCCAAGGAACAAGCTGATGATTCTAATATATGTGGAAGCGTTAATGACGTTCCTGAAGATAATGCCTGCCCAGAGCCTGGAAATGGTGAAAGCGCATCCCACGGTTCTGAAAATAACAATTCAGAAATTGAAAATGATGTTCCAAAGGGTAGCACTTCTGAAAATGGGAATACTTCAAggaaacaatttaaaaatgttGTTGCCATTGTTGATCCTCCTCGTGCTGGACTTCATCCAACTGTGATAAAAGCTTTAAGAACTCATACACTCCTGCGGAGGCTCGTTTATATATCATGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACACCATCCCCAACAGAAATTGAGAGAGGAAATAAAGACAACAGAGGATGGAGACGGATGAGTAGTGCTGGTCTAGCTCGTCATAGGGCAAAGTCTATGCCCATTTCAGAGGCCTTCAAACCCGTAAAAGCCATGGCTGTTGATCTTTTTCCACACACTCCACATTGTGAATTGGTTATGCTCCTTGAGAGGTAG 2433 0.4164 MAATPASAKLIEVLQTLTAQDSTVESNPTAPQDTQIQELNDDVVTTDKRKRDETDGNADADGKSTLHPMWKTSLCSYFRKHASCSHGDTCRYAHSEEELRQRPDNTWDPTSERGKKALKTVTGEKIAVKDGVMMTELVGDDGDGEGGDDGFASNQALSKCLVHLPMKWSSENLRNFLNEQGIPFKHAKTKKGMAIGFVTFEDEEQLKSSSKELQGKQIGNKTLEVADVNPRSFEKKSNSNVPSSGTLGDETNDDNLVIDGSESKKKSSREVVTPLAHLSYADQLEQKKYSLMQILKKLPRNARKACPNGVPVPEWILKSREIGGLPCNLEGIIESPIVNGYRNKCEFSIGYSMEGKATVGFSLGNFREGVTAVEEPVDCPNISTIACKYAAIFQEFLQHTDLPIWNRFKNCGFWRQLTVREGRSNGNVVDGETFDGIAEVMLIVQVSTASFDNSQVDAEFKRLAQAFVTGATSHCPTLPLTALIVQDHQGISNVAPSDAPLHSLPIAAGDPERDVNISAADVRIHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDVCCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFICSKAEQVMGSLLKEYLDVPKEQADDSNICGSVNDVPEDNACPEPGNGESASHGSENNNSEIENDVPKGSTSENGNTSRKQFKNVVAIVDPPRAGLHPTVIKALRTHTLLRRLVYISCNPESLVANAIELCTPSPTEIERGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLER 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03572 810 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 271 810 IPR010280 GO:0006396|GO:0008173
Tsu02g03572 810 MobiDBLite consensus disorder prediction 20 41 - -
Tsu02g03572 810 ProSitePatterns RNA methyltransferase trmA family signature 1. 705 737 IPR030390 -
Tsu02g03572 810 SUPERFAMILY RNA-binding domain, RBD 163 237 IPR035979 GO:0003676
Tsu02g03572 810 SMART c3hfinal6 69 96 IPR000571 GO:0046872
Tsu02g03572 810 MobiDBLite consensus disorder prediction 665 694 - -
Tsu02g03572 810 ProSiteProfiles Zinc finger C3H1-type profile. 69 97 IPR000571 GO:0046872
Tsu02g03572 810 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 84 810 IPR045850 -
Tsu02g03572 810 SUPERFAMILY CCCH zinc finger 66 101 IPR036855 GO:0046872
Tsu02g03572 810 MobiDBLite consensus disorder prediction 232 251 - -
Tsu02g03572 810 Gene3D - 63 102 - -
Tsu02g03572 810 Pfam Methyltransferase domain 567 627 IPR025714 -
Tsu02g03572 810 MobiDBLite consensus disorder prediction 20 65 - -
Tsu02g03572 810 CDD RRM_SF 160 225 - -
Tsu02g03572 810 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 96 IPR000571 GO:0046872
Tsu02g03572 810 Pfam tRNA (Uracil-5-)-methyltransferase 696 745 IPR010280 GO:0006396|GO:0008173
Tsu02g03572 810 MobiDBLite consensus disorder prediction 42 60 - -
Tsu02g03572 810 MobiDBLite consensus disorder prediction 228 265 - -
Tsu02g03572 810 MobiDBLite consensus disorder prediction 650 694 - -
Tsu02g03572 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 273 810 IPR029063 -
Tsu02g03572 810 Gene3D - 160 231 IPR012677 -
Tsu02g03572 810 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 223 IPR000504 GO:0003723
Tsu02g03572 810 Gene3D Vaccinia Virus protein VP39 511 809 IPR029063 -
Tsu02g03572 810 CDD AdoMet_MTases 569 623 - -
Tsu02g03572 810 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 84 810 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03572 K15332 - tcc:18590864 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03572 02 40141254 40147136 Tsu02g03572 02 40141254 40147136 ECH