Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g03560 | ATGGAGGTTAGACTAACCGTAACCCTAAATGGTCTAGGTGAGCTAAACATGTTGAAGGTGGAGCTCGTGATTGAGTTAAGTTGGGTTGGAGATGGAACTAAACATGCTAAAGGTGGAGCTGTTTCACAAGCACCTGCATCATCCCCTAAATCCCCAACAAAAACTCCCACAGCACCATCACCAAAACCATTAGTCCCTAAATTACCTGAATCACCGGACTCAACAGATTCAGTCCCGGACGACATCACAAGAATCCTAGTAAAAGCGAAAACATTCTCCGTCCTAATCCGTCTCCTAAAATCAACAGAAATCATGAGTAGCATAAACTCACAGCTCATCACAGCTAAAAACGGCGGCTTAACAATCCTTGCACCGGACGATTCTGCTTTTTCAAGCCTCAAAGCCGGGTTCCTCAATTCCTTAgacgaaaacaaaaaaatcgaACTTTTACAATTCCACATCTTACCCCAATACGTAGCGAGTTCAAATTTCGATTCTTTAAGCAACCCTGTTCAAACAGTAGCCGGTAAAGATCCTACAAGGCTTCCACTTAATGTTAATGCATTAGGTAACAATGTTAGTCTTCAAACTGGTGTTGTTAACGCTTCAATTGTTGGCGTTGTTTACTCCGATAACAAGCTCGCGATTTATCAATTGGATAAAGTGCTTCTTCCTCTTGATTTCTTTAAAACTAAAGCTCCTGCTTTGGCTCCATCTCTTGCTGCTACTGCTAAGGCTCCTAAAGCTGCTGCTAAGGAGAATTCTTCAAGTGATGATAAAGATGAAAATGATCAGGATCAAGGTAAATCTGGAACAGAGAGATTGTGTGGATTTCTTGGAACAACATTGGTGTCTCTTGTTGTTGTCACAATGATGTGA | 879 | 0.4084 | MEVRLTVTLNGLGELNMLKVELVIELSWVGDGTKHAKGGAVSQAPASSPKSPTKTPTAPSPKPLVPKLPESPDSTDSVPDDITRILVKAKTFSVLIRLLKSTEIMSSINSQLITAKNGGLTILAPDDSAFSSLKAGFLNSLDENKKIELLQFHILPQYVASSNFDSLSNPVQTVAGKDPTRLPLNVNALGNNVSLQTGVVNASIVGVVYSDNKLAIYQLDKVLLPLDFFKTKAPALAPSLAATAKAPKAAAKENSSSDDKDENDQDQGKSGTERLCGFLGTTLVSLVVVTMM | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g03560 | 292 | MobiDBLite | consensus disorder prediction | 52 | 68 | - | - | |
| Tsu02g03560 | 292 | SMART | fasc_3 | 121 | 226 | IPR000782 | - | |
| Tsu02g03560 | 292 | PANTHER | FASCICLIN DOMAIN PROTEIN | 40 | 288 | - | - | |
| Tsu02g03560 | 292 | PANTHER | FASCICLIN-LIKE ARABINOGALACTAN PROTEIN | 40 | 288 | IPR045003 | - | |
| Tsu02g03560 | 292 | Pfam | Fasciclin domain | 91 | 225 | IPR000782 | - | |
| Tsu02g03560 | 292 | SUPERFAMILY | FAS1 domain | 59 | 226 | IPR036378 | - | |
| Tsu02g03560 | 292 | Gene3D | FAS1 domain | 67 | 225 | IPR036378 | - | |
| Tsu02g03560 | 292 | ProSiteProfiles | FAS1/BIgH3 domain profile. | 79 | 223 | IPR000782 | - | |
| Tsu02g03560 | 292 | MobiDBLite | consensus disorder prediction | 247 | 272 | - | - | |
| Tsu02g03560 | 292 | MobiDBLite | consensus disorder prediction | 252 | 269 | - | - | |
| Tsu02g03560 | 292 | MobiDBLite | consensus disorder prediction | 35 | 79 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g03560 | Tsu-Chr2 | 39985259 | 39986860 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g03560 | - | - | gmx:106794109 | 303.523 |