Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03547 ATGTTATCTTTTAGTAGAAATTGCTTCAAATATTGTAGAAGCCACTTCAAAATAAATACCTCAAATCAAAATATATGCTTTCACAAGAAATTTCCTAAGATTTTTGGGGAAAATTCCcaattttctgttttgattCCACTTATTTGCTtaaattctcattctcattaTTATTCAACTAAAGCTCCTTCAAGATCTTATAGAAGAAGAGCTCGAAATCGGTTTTTGAAAGCCAATAAACCTATTCTTGATCAAGCAAAGTTTCACTTTGCACAGTCTCAACTTCTCCCGAGGTTTACTCCCGAAGAATTATGCAATGTTATTGCTAATCAACGCGACCCGTTAGTTTGTTTAGAACTTTTTCACTGGGCGTCTCACCAGCCTAGGTTTCGACACAATGTGTCGACTTTTCATGTTACAGTAAAGAAGCTTGGTGATGCCAAAATGTACCAAGAAATGGATGATATTGTGAACCAATTGCTTGCGGTTCCGTCTATTGGTTCCGAGGTGTTGTTTAATATGATCATATATTATTTCACTGAGGCGCGGAAGTTGACCAGAGCTGTTGTTGTGTTTAAGCATATGAAGAGTAGTAGAAATCCGAATTTCAGTTTTAGGCCTTCGATTAAAACGTATAATATTCTTTTGGGCGCACTTTTGAGTAAAGGATACAACACCGATATAAACCTTGTGTATATGGAAACTATGAGAGGTCTATTTAGGCAAATGGTTAATGATGGGATAGAACCCGATGTTTTTTCATTAAATTCTATGATAAAAGGTTACATCCTTTCTCTTCATGTTAACGATGCGTTGAGGATATTTCATCAGATGGGTGTGGTTTATGAATGCAAACCGAATTCTTTAACTTATGATTACTTGATTCATGGGTTGTGTGCCAAAGGTAGAACAGAGAATGCCAAAGAATTGTATCATGAAATGAAGACCAAAGGTTTTGTCCCGAATAGCAAAACTTATAATTCGCTTGTCAGTTCTTTGGCACTCGTCGGAGAAGTTGAAGAGGCAGTAAATTTTCTATGGGAGATGACTGAAAAGCAAAGATCAGTTGATTTTATTACATATAGGACTGTATTGGATGAGATATGTAGACGAGGAAGAGTTGAAGAGGCCATGAAGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGGCATACTTACAGGAAGCTTCTGCACGTGCTTGAAGATGATTATGGGAATTCAGAAAACAGAATTGATTCAGGTCCAGCTTTAATTCCACCTGGAAAATCTTGGTAA 1278 0.3599 MLSFSRNCFKYCRSHFKINTSNQNICFHKKFPKIFGENSQFSVLIPLICLNSHSHYYSTKAPSRSYRRRARNRFLKANKPILDQAKFHFAQSQLLPRFTPEELCNVIANQRDPLVCLELFHWASHQPRFRHNVSTFHVTVKKLGDAKMYQEMDDIVNQLLAVPSIGSEVLFNMIIYYFTEARKLTRAVVVFKHMKSSRNPNFSFRPSIKTYNILLGALLSKGYNTDINLVYMETMRGLFRQMVNDGIEPDVFSLNSMIKGYILSLHVNDALRIFHQMGVVYECKPNSLTYDYLIHGLCAKGRTENAKELYHEMKTKGFVPNSKTYNSLVSSLALVGEVEEAVNFLWEMTEKQRSVDFITYRTVLDEICRRGRVEEAMKFLQELQEKDLVDGHTYRKLLHVLEDDYGNSENRIDSGPALIPPGKSW 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03547 425 Pfam Pentatricopeptide repeat domain 171 217 IPR002885 -
Tsu02g03547 425 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 33 413 - -
Tsu02g03547 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Tsu02g03547 425 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Tsu02g03547 425 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Tsu02g03547 425 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Tsu02g03547 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Tsu02g03547 425 PANTHER ATPASE EXPRESSION PROTEIN 3 33 413 - -
Tsu02g03547 425 Pfam PPR repeat 253 277 IPR002885 -
Tsu02g03547 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Tsu02g03547 425 Pfam PPR repeat 356 382 IPR002885 -
Tsu02g03547 425 Pfam PPR repeat family 285 333 IPR002885 -
Tsu02g03547 425 Gene3D Tetratricopeptide repeat domain 232 413 IPR011990 GO:0005515
Tsu02g03547 425 Gene3D Tetratricopeptide repeat domain 74 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03547 Tsu-Chr2 39849395 39852766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03547 183 399 Glycosyltransferase AT1G05670 24.887 7.08e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03547 - - gmx:102666460 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03547 02 39849395 39852766 Tsu02g03547 02 39849395 39852766 ECH