Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03515 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCCGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGATACCGATGGGCGATGCCCTGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACGGCGTCAAAGTGTGAAAGACTGCTGAGTGAAATTAATATGGAGAAAAAGGTGAAGAATCAGAAAGCCAAGTCTAAATCTTCTGATGGGCGGAAGCAGCTCAGTAGTGTTCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGAATTTGGCAGACGAAGATCTTCTCCACAATCGGGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCCCGAACGGCAGCTGGTATCATTCAACAGTTTCCTAACGAAACTTGCAGTGTATATATTACATATTCAAAGGAAGATGAAGCAATTCGGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATCAACCCTGATTGTCTATATCTGCATGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATTTCAGCTTACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAAACAGTATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCTCTAGATGATTTCACAACTAATTCTACAGAAAAGCCCATTATTAAAAGTGCTCCAACTAACTCTGTACCTCTTCCCACAAATACAGTAAGAAGTTCGTCCCCAAATGGAATCAATGGGAGACATGTACCTCTTCCCACAAGTGCTGCGTGGGGTACACAGGCTTCAAGTTGTCAGCCCCCTGTTGGAGGTCTATCCTATCCATCTGTTATGTCAAAGCCAAAACCTGATACAGTCAATAGCACACTTGCATTTTCTACTGCTGTTACGGGGATGACTCAGGCTTCTGCAGCACCTTGTGATGGTTCAAAGAGGCCGCCATCAAGTGATGGGAGTCATAATACAATACCTAGGGTGAAAAGTGAATTGCCGAAACCTGTTAAACAATATAATAGCATGGACAGTCTGGCTAGTGCAGGCGAAAAAACGTCTGCTTGTGATGTATCTCCTGCGCCTGTCAATTTGAACAGCGAGCTGTCTTCTCGACCATTGTCACGGGATAGTGATAGAGGCAATTGTAATATAGCAAACACATTAAATTCTACTAACATTACTGGACATTCTTTTAGCTCTGGTCCTGAGGAAGCAATGTCTGCTACCAATGAAGTGATTCGGAATTTATCTAGTGAGTTCTCCTCGATTAACATTGGTAGAAGTACCTCAAATGAACAATATGGTTTAAACAAACCTAGTAGCCCACCTATTGATCATGTCTTGACTAAATCTCAAATTCAAGAAGGATCACAATATGATGTTGACAGATTTAAAGATCCAATAACAACAAATGTGGTTGGTAAAACTTCCACATCAGATAATGGGGTTTTTAGTCCAAAGGAACAGTTTGGAGGGATATTGAATTCTCAGTCTCAAGTAGTATCAGATAAAGCTGATGTCGAAGATGATGTAACATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTTGTCTTTCTTATTTACCCAAGGCCACAAATTTCCTTAATGTATCTAAAATTTCTAGCCCTAGTCTAATGCAGTACGGTGAACCATGTACTGCTGCTGGCAATGCTGGTTCTCTATCTTCTGATGATAGAGTTCAAGATGAATCTATTTTACATTCGTCTAGCATGTTCTGTAATGGCTATCCTGAGAAATTGATCAGTGGCAGCTCTAATGGTTTTCTTCATGATGAAAGAAACAGGCAAAATATCGGAAGGTTAGTTGGTGATGCTGTTAATGCTGGGTGTGATGCTGCAATTGATAAGGGAGAAAGTAGCATTATCTCAAATATTCTGTCCATCGATTTTGATCCCTGGAATGACTCCCTAACATCACCTCATAACATAGTGAAGTTGTTGGGTGACAATACTGATAGCCAGCCAAgtcctttaaaaaaatctagttCTTGGCAAGTTCCAAGTAACAATCAGTCAAGGTTCTCTTTTGCAAGGCAGGAAGAatctaaaattcaaacttttgaTGTGCATCCGTCTTATGGTGTCAGCCAGCAACAGCCCAAGAGCCACACACTCAACCAGAATCTGGCAGAAAGAGATTTTTATATGGATAATTTGGGAATTGCAAATGGCTTTCCCACCAGTAACTTTGAGGAAGCTGAAAATATAGGCAGTGTTCATTCCATTGCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTATCAGCTCCGCCAGGTTTTTCAATTCCAAGCAGACTGCCTCCTCCTGGGTTTTCTTCGCATGAGAGATCAGAGCAGAGTTTTGACTCCCTATCATCTGGGAATTCATTACTTGACAATTCTTCCTTTTTGAGAAATTCACATCAGACACTCTCAGCTGCAAATATTGGTGCCACAGGCGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGCAAGGGGAGACTTCAAGGTGCACAAAACAGCCAATCATTGGATATACAATCAAATTTCATGCCACAATTAAATTACTTCGAGAATGAAGCCAGACTACAATTCCTGATGCAAAGATCTCTGGCACAGCAGCAAAACCTTAGATTTTCTGAACTTGGGAATACTTTTTCTCAACTTGGTGATTCATATGGTATTTCTTCAAGGTTAGACCAATCTCAAGTCAGTAACCTAGCCCCTTTCCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAATCTTGTCAAATGGCCAATGGAATGGGTGGAATGGGGTGCAGAGCGGGAACGGTCTGGGTGTGGCCGAACTTTTGAGGAATGAAAGACTTGGATTGAACAAGTTTTACCCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATATCTACAACAGAACATTTGGGATGTGA 3111 0.4105 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLSEINMEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLHNREYFGQYGKVLKVSMSRTAAGIIQQFPNETCSVYITYSKEDEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNSPCINPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGATNSMQRRSGNVLPPPLDDFTTNSTEKPIIKSAPTNSVPLPTNTVRSSSPNGINGRHVPLPTSAAWGTQASSCQPPVGGLSYPSVMSKPKPDTVNSTLAFSTAVTGMTQASAAPCDGSKRPPSSDGSHNTIPRVKSELPKPVKQYNSMDSLASAGEKTSACDVSPAPVNLNSELSSRPLSRDSDRGNCNIANTLNSTNITGHSFSSGPEEAMSATNEVIRNLSSEFSSINIGRSTSNEQYGLNKPSSPPIDHVLTKSQIQEGSQYDVDRFKDPITTNVVGKTSTSDNGVFSPKEQFGGILNSQSQVVSDKADVEDDVTSFDNQRLKDPEVCLSYLPKATNFLNVSKISSPSLMQYGEPCTAAGNAGSLSSDDRVQDESILHSSSMFCNGYPEKLISGSSNGFLHDERNRQNIGRLVGDAVNAGCDAAIDKGESSIISNILSIDFDPWNDSLTSPHNIVKLLGDNTDSQPSPLKKSSSWQVPSNNQSRFSFARQEESKIQTFDVHPSYGVSQQQPKSHTLNQNLAERDFYMDNLGIANGFPTSNFEEAENIGSVHSIASSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQSFDSLSSGNSLLDNSSFLRNSHQTLSAANIGATGDIEFMDPAILAVGKGRLQGAQNSQSLDIQSNFMPQLNYFENEARLQFLMQRSLAQQQNLRFSELGNTFSQLGDSYGISSRLDQSQVSNLAPFPQLSMQQSTNAILSNGQWNGWNGVQSGNGLGVAELLRNERLGLNKFYPGYDDSKYRMPNSGDIYNRTFGM 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03515 1036 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Tsu02g03515 1036 SMART rrm2_1 111 192 IPR003954 GO:0003676
Tsu02g03515 1036 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Tsu02g03515 1036 SUPERFAMILY RING/U-box 3 66 - -
Tsu02g03515 1036 CDD RRM_CNOT4 105 204 IPR034261 -
Tsu02g03515 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Tsu02g03515 1036 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1036 IPR039780 GO:0004842|GO:0030014
Tsu02g03515 1036 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 819 847 - -
Tsu02g03515 1036 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 354 431 - -
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 248 267 - -
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 272 298 - -
Tsu02g03515 1036 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Tsu02g03515 1036 SMART rrm1_1 111 192 IPR000504 GO:0003723
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 409 431 - -
Tsu02g03515 1036 Gene3D - 111 192 IPR012677 -
Tsu02g03515 1036 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Tsu02g03515 1036 MobiDBLite consensus disorder prediction 707 731 - -
Tsu02g03515 1036 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1036 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03515 Tsu-Chr2 39402065 39413687 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03515 K10643 - gmx:100801880 1550.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03515 02 39402065 39413687 Tsu02g03515 02 39402065 39413687 ECH
Tsu02g05034 02 59410587 59421794 Tsu02g03515 02 39402065 39413687 PCT