Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03503 ATGAATAAACCGAAAAGCGATGCTGTAATTTTCACGAAGCAGCCTTACATCGAGGATACAGGACCAAGCAAAATAACTGGTATTTCGTTTTCCACGCTATCTGAAGCAGAAATCAGCAAAATTGGTGAAGTTCAAGTGTGGAAAGGCAGTTACTATGATGCATTTCGAAAGGCCGATCCTGGTGGCTTGTTGGATCCTCACATGGGCCCTGCTAATAAGCGTCTTGATATTTCCTGTGCAACATGCCACGGGAACTTTGCTGACTGTCAAGGGCACTTTGCAAGCTTAAAACTTACCCAACCTGTTTTCAATGTCGGATACTTGAATCTAATTGTGAAAATACTGAAGTGCATTTGTAAGCGATGTGCTCGTATTCTCCTTAATGAAAATGACCGTAAAATGTATTTGGGGAAAATGAGAAACCCTAAATTGGATGGGCTGCAGAAGATAAATACGCTTGAAGCTGCAacgaaaaaattgaaaactgttAAATCCATACAGTGCCCAAGATGTGGATATATGAATGGTACAGTGAAGCACAATAAGCCTACCCTGAGCATTGTTCATGAATTCTCAAATGCTAAGAATGAAGATGTCGCAGAGCTCGAATCAGCTCTTTCTCATATGAACAATTATAGGGCATGCAACGATACATTGTCTAAACGAACTCTTAACCCTCACATGGTTCttgatttgtttaaaaagatGCACCATGAGGATTGTGTATTACTTTATCTTGCCGAAACACCAGAGAATCTCATCATAAATAGCATTGCTGTGCCCCCAATAGCTATTCGACCTTCAGTCATGGTGGATGGAGCACAGAGTAATGAAAATGACATAACAGAGAAGCTAAAGAGAATAATCCAGGCAAATACTGCCGTGCATGATGTATCAGTTGAGCCATCCAAATATGAGGCTGGTTATCTTTTGCTTCAATTTGAGGTTGCTCAATACATAAATAGTGATGTTAAAGGAACATACAATATGCAAGTGACCAAGCCTTTAACCGGCTTTATTCAGCGCATTAAAGGGAAGCAAGGTCGTTTCCGTAGCAATCTGTCTGGAAAACGTGCTGAATATACTGGCAGGACAGTTATTTCACCCGATCCTAATCTTAAGATTACTGAGGTTGCAATACCTATTCATATGGCTCGCATTTTGACTTATCCCGAGCGTGTTACACATCACAACATAGAGAAGTTGAGACAATGTGTGAGAAATGGTCCCGACAAGTATCCTGGTGCAAAGGTGGTTAAAAATGCTGGAGGTGAATCATGGACTTTAAAAATTAATCGTACAAAGCACGCGGATGAACTGAAATTTGGTGATATTGTTGAACGCCATTTAGAAGATGGAGACATTGTTCTTTTCAACAGGCAACCAAGTTTGCATCGGATGTCTATGATGTGTCATCGgGCAAGGGTTATGCCTTGGAGAACTTTGAGATTTAATGAATCTGTATGTAATCCATATAATGCTGATTTTGATGGTGATGAGATGAATCTACATGTTCCACAAACTGAGGAGGCACGAACAGAGGCTCTTTTGTTGATGACGGTGCAAAACAATTTGTGCACACCAAAAAACGGGGAAATTCTAGTTGCCTCCACACAAGACTTTTTAACCTCTTCCTTTCTCATAACTAGGAAAGATACTTTTTATGACCGTTCAACATTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATTCTATTGATTTGCCAACTCCTGCAATTATTAAGCCAGTCGAACTCTGGAGTGGTAAACAGTTATTTAGCATTTTATTGCGCCCACATGCAAATGTGAGGGTCTATGTGAACCTCACTGTAAAGGAGAAAACACATAAGACAAAGCGTGATGACAGGGAAAGACTAGTTACAACATTGTGCCCTTCTGATGGATTTGTTTATTTTCGCAATAGTGAGTTAATCTCCGGACAACTTGGAAAGGCGACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTCTTACTAAGAGACTATAAGTCAGATGCTGCTGCTTCTTGCATGAATCGTCTTGCTAAATTAAGTGCTCGTTGGATAGGTAATCATGGGTTCTCGATAGGCATTGATGACGTCCAACCTAAAAGTCATCTGATCGGCgaaaaggacaaaataattAAAGGTGGTTACAAAGAGTGTGATGGTTATATAGAAGCTTTCAATAAAAGACAGCTACAATCTGCACCTGGTTGTGATGCTGCTCAAACATTAGAGTCTAAGATATTTGGTAACTTGAATGGCTTACGTGATAAAATAGCGGAGGTTTGCATGCGAACGTTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGTTCCAAAGGATCTCCTATCAATATCTGTCAAATGGTTGCCTGTGTTGGTCAACAGTCAGTTGGAGGTTGTCGTGCTGCTAATGGGTTCATAGATCGTAGTCTTCCTCATTTCCATAAAAAAGCGCAAACCCCTGATGATAAAGGTTTTGTTCGTGATTCCTTTTTCGATGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGAGAGAAGGGCTCGTTGATACCGCGGTCAAAACTGCAGACACTGGATATATGTCTCGTAGATTAATGAAAGCTCTTGAGGACTTATTTTTACATTATGATTACACTGTAAGAGATACAAATGGTGGTATTGTTCAGTTTTGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGGTTATTCCTCAAAAGCAAGGCCATATGTCCTAGTGATGGAGATGATGTAATCTTATCTTCTTCAGATATGCATAAAATACTTCACGAGAAGCTTTCAGAAGTTGGCATGTACAAGTTAGAGGAGAAGGATGCTTCAGGAAATGATATAATGCCAGAGGCGGGCTTCTCTGCTGATTTCATAAAATCTCTAGAATCATTTGTCgaagaaaatacaaaattaacaGAAACTATCGCCGAGGACGATCCTAAACATCTGAAGAAACTGAATAACTTTATTCCAAGGATATCCGGTATCAGTCGCAGACAACTAGAGGTTTTTTTGGATATTTGTCTATCACGTTACCGTCTCAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCataatagaaataataaatggAGCATCAAATATTAAGACACCGATCATCACTGCAATACTtgagaaagataataatataaatactgCAAGGATGGTGAAAGGTCgaatagaaaaaacaactttaggCCAGGTTGCAAAGAGTATCAAGGTTGTTTGCACTTCAAGATCAGCGGCACTTTTTATCTCACTGGATGAGAAGATAATCGAAGATGCATGTCTGAATATAGATCCTAATATTGTCAGAGAATCAATTTTGCAAACTGGAAAACTGAAGTTGAAGGGAGAGAATGTTAAGATTTTGGATGGTAAAAAGCTTCAAGTGGATGTCCCCCGGGATCAAAAAGCTGTTAACCAAAGTGAAGTCATTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGTGTTAAAACTGCCGAACGAGTTGTCCTCGAAGTAGGTAAAGAAGTTACGAAGTTCAAATTACTGGTGGAAGGTAATGGCCTTAAAGAGGTTATTGGAATTGAAGGGGTTGATGGACATAAAACTGTTACTAATCATGTCATTGAAATGAATAACGTTCTGGGAATTGAAGCTGCCAGAGATTGTATCATTGGACAGATACAATATACAATGAAAGAACATGGAATGACTATAGACATACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGCCAAGTCCTTGGAATGACAAGACATGGAATTCAGAAGATGGGCAGAAGTACATTGATGCTTGCATCATTTGAGAGTTCAACAGACCATCTTTTTGAGGCATCCTTGCGTGGGAAGAGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCAATTCAGATAGGCACTGGAATGATTGAGATCAAACAAAGGTTGGAACCTCCGGTGTTGCCTCGAGGAGCCATTCCTATTCTATCTCAAGTTTGA 4206 0.3887 MNKPKSDAVIFTKQPYIEDTGPSKITGISFSTLSEAEISKIGEVQVWKGSYYDAFRKADPGGLLDPHMGPANKRLDISCATCHGNFADCQGHFASLKLTQPVFNVGYLNLIVKILKCICKRCARILLNENDRKMYLGKMRNPKLDGLQKINTLEAATKKLKTVKSIQCPRCGYMNGTVKHNKPTLSIVHEFSNAKNEDVAELESALSHMNNYRACNDTLSKRTLNPHMVLDLFKKMHHEDCVLLYLAETPENLIINSIAVPPIAIRPSVMVDGAQSNENDITEKLKRIIQANTAVHDVSVEPSKYEAGYLLLQFEVAQYINSDVKGTYNMQVTKPLTGFIQRIKGKQGRFRSNLSGKRAEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGAKVVKNAGGESWTLKINRTKHADELKFGDIVERHLEDGDIVLFNRQPSLHRMSMMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDSIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHKTKRDDRERLVTTLCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKSHLIGEKDKIIKGGYKECDGYIEAFNKRQLQSAPGCDAAQTLESKIFGNLNGLRDKIAEVCMRTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFIDRSLPHFHKKAQTPDDKGFVRDSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLKSKAICPSDGDDVILSSSDMHKILHEKLSEVGMYKLEEKDASGNDIMPEAGFSADFIKSLESFVEENTKLTETIAEDDPKHLKKLNNFIPRISGISRRQLEVFLDICLSRYRLKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILEKDNNINTARMVKGRIEKTTLGQVAKSIKVVCTSRSAALFISLDEKIIEDACLNIDPNIVRESILQTGKLKLKGENVKILDGKKLQVDVPRDQKAVNQSEVIFQLNNLKNLLPSVVVKGVKTAERVVLEVGKEVTKFKLLVEGNGLKEVIGIEGVDGHKTVTNHVIEMNNVLGIEAARDCIIGQIQYTMKEHGMTIDIRHIMLLADMMTVRGQVLGMTRHGIQKMGRSTLMLASFESSTDHLFEASLRGKSDPIEGVSDCIIMGKPIQIGTGMIEIKQRLEPPVLPRGAIPILSQV 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03503 1401 CDD RNAP_III_RPC1_N 33 891 IPR035697 -
Tsu02g03503 1401 CDD RNAP_III_Rpc1_C 1037 1379 IPR035698 -
Tsu02g03503 1401 Gene3D - 821 879 - -
Tsu02g03503 1401 Gene3D - 1334 1379 - -
Tsu02g03503 1401 Pfam RNA polymerase Rpb1, domain 3 524 703 IPR007066 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1384 - -
Tsu02g03503 1401 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1384 IPR045867 GO:0003899|GO:0006351
Tsu02g03503 1401 Pfam RNA polymerase Rpb1, domain 2 356 521 IPR000722 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 SMART rpolaneu7 251 549 IPR006592 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 Gene3D - 347 528 - -
Tsu02g03503 1401 Gene3D RNA polymerase Rpb1, domain 3 529 702 IPR042102 -
Tsu02g03503 1401 Pfam RNA polymerase Rpb1, domain 5 841 1333 IPR007081 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 Gene3D RNA polymerase ii 389 448 - -
Tsu02g03503 1401 Pfam RNA polymerase Rpb1, domain 4 729 834 IPR007083 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 Gene3D - 881 931 - -
Tsu02g03503 1401 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Tsu02g03503 1401 Gene3D - 703 820 IPR038120 -
Tsu02g03503 1401 Gene3D RNA polymerase II, clamp domain 14 136 IPR044893 -
Tsu02g03503 1401 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03503 Tsu-Chr2 39255046 39285365 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03503 K03018 - gmx:100811292 1951.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03503 02 39255046 39285365 Tsu02g03503 02 39255046 39285365 ECH