Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03414 ATGGCTCAAGCAACTCGTGGTGAAAAGATTCATGATCAGAGTCAAGAAAAAGTTATTCAAGAATCAAGCAATTCAAGCTTCAAATTCAATGCTCAAGCACCTGAATTCGTTCCAAGATCGCATTCTCAGATTCCAATTTCTGGTTATTACTATCCTTGTTTTCAGATTATTGGTGGTTCTGGTGAATCTGATTGGTTTTACGTTGGTGATCAAGATCCTTCATGTTTGATTGCTAATGCTAGTGTTCCGCCTCCGAATTGTTCGAAGAATGTTCTCAACCCTGATCTTCAACAAAAGATCGTTAAACAGGTGGAGTATCAGTTCAGTGATTTGAGCTTGCTAGCAAATGAATCTTTCCAGAAACAGATGAATAAGGATCCTGAAGGTTATGTTCCAATTGCTGTGATTGCTTCCACTAAAAAGATTAAGTCACTTGTTACCAACATTCATCTTCTTACTCAAGCTATTCGTCAGTCGTCAAAACTTGTTTTGAGTGCTGATGGCAAGAAGGTTAAACGCAAACATCCTTTTGGTGAAAAGGAGAAAGAGGAATTGCAGtCTCGTACTGTTGTGGCGGAGAATTTACCTGACGATCATTCCCATCAAAATCTTCAGAAAATATTTTCAGTAGTTGGGAGCGTGAAAACGATCAGAATATGCCATCCTCAAGAACCAAATTCTTCTCGCCCAAAAGGTGATTTCCTCATCAGTAACAAGCTACATGCACTTGTGGAGTATGAGTCATCGGATATAGCTGACAAAGCCGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGTTGCTGCTTAGATGCTCGCCAAAATCTGTTTTGAAGAATAGAAAGTCAGAATTTGATGGCTTACTAGATGAGGAAGAGAATCTAAATACTGAAATTGCTGAGGATTCTTCTCATCATAACACTGAAACatgtgttgagaataatGGTGATGAAACTCCAGTAGGATCGAAGAAAGGATGGGCTAGAGGGCGTGGAAAGGGAAGAGGACGCACTCAAAACCATACTGGACGTGGACTGCTTGCTCCACCATCTCCATCAAGCAGCGTTGCCCTGAGTGAAGTATCGACTAAACCCAACACCAAGGGCCCGAGAATGCCAGATGGGACAAGAGGTTTTGCAGTCGGACGGGGCAAACCAATAAGTACTCCCACTTCACCTCAGGAGTAA 1203 0.4123 MAQATRGEKIHDQSQEKVIQESSNSSFKFNAQAPEFVPRSHSQIPISGYYYPCFQIIGGSGESDWFYVGDQDPSCLIANASVPPPNCSKNVLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPIAVIASTKKIKSLVTNIHLLTQAIRQSSKLVLSADGKKVKRKHPFGEKEKEELQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKGDFLISNKLHALVEYESSDIADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEFDGLLDEEENLNTEIAEDSSHHNTETCVENNGDETPVGSKKGWARGRGKGRGRTQNHTGRGLLAPPSPSSSVALSEVSTKPNTKGPRMPDGTRGFAVGRGKPISTPTSPQE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03414 400 SMART la 94 174 IPR006630 -
Tsu02g03414 400 Gene3D - 174 274 IPR012677 -
Tsu02g03414 400 ProSiteProfiles La-type HTH domain profile. 90 181 IPR006630 -
Tsu02g03414 400 SUPERFAMILY "Winged helix" DNA-binding domain 93 177 IPR036390 -
Tsu02g03414 400 CDD RRM_La_like_plant 188 275 IPR034878 GO:0003723
Tsu02g03414 400 Pfam La domain 100 158 IPR006630 -
Tsu02g03414 400 SUPERFAMILY RNA-binding domain, RBD 172 275 IPR035979 GO:0003676
Tsu02g03414 400 SMART rrm1_1 189 274 IPR000504 GO:0003723
Tsu02g03414 400 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g03414 400 MobiDBLite consensus disorder prediction 304 400 - -
Tsu02g03414 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Tsu02g03414 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 273 IPR000504 GO:0003723
Tsu02g03414 400 Gene3D - 88 173 IPR036388 -
Tsu02g03414 400 MobiDBLite consensus disorder prediction 349 371 - -
Tsu02g03414 400 Pfam Ataxin-2 C-terminal region 25 41 IPR009818 -
Tsu02g03414 400 PANTHER LUPUS LA PROTEIN-RELATED 9 393 IPR045180 -
Tsu02g03414 400 PANTHER LA-RELATED PROTEIN 6C 9 393 - -
Tsu02g03414 400 PRINTS Lupus La protein signature 103 120 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu02g03414 400 PRINTS Lupus La protein signature 129 144 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu02g03414 400 PRINTS Lupus La protein signature 160 173 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu02g03414 400 PRINTS Lupus La protein signature 182 198 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03414 Tsu-Chr2 38170831 38173597 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03414 K15191 - gmx:100796786 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03414 02 38170831 38173597 Tsu02g03414 02 38170831 38173597 ECH