Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03347 ATGGCGTCGTTTCCATTGATTCAGCGCGCACGAACCACAATGTTTTCTTTGAAGCTACGAACAAATTATATCTATGGAAACAACTACTTCTTCAAAACCTTGAGTACTTCTGCAATTCCAAACGACTATGGTAGATTCCCTCATCAACCACCACCACCTTCTGATCATAACAACACACCATTTCAACCACCTCAACAACATTTcaatcatcataatcaatttccTCATCGTAATAATCAAAATGTTCAACAGGGTCGATTTCCTCCTCAACAGAATTGGAACCCTCAAAATCGACCTCCTCCTcctcaaaaccctaatttccgGCCACCACCATCGCCTcctcaaaaccctaatttccgGCCACCCATTCGTCAAAATCCTAACTTTCAGCCACCCAATAATCCCAATCGATCAAACAACCAGAATCAGTGGAACCCACAAAATGGTAACCCCAACCAATTTCAAAACCCTAATAATCAAGTTCAAAACCCTAATAGCCAATTCCAAAACCCTAAGGATTCTGTTCAAGAACAAGCTCCTCCGCCTCCTTCAATTGTTGACTTGATACGTTTTTGTAGAGAGGGGAAGGTTAAAGAAGCGCTTGAATTGATGGAAAAAGGTATCAAAGCTGATGCTGATTGTTTTGATCTTTTGTTTGAGTTGTGTGGTAAATCGAAATCCGTTGAGGATGCTAAGAAAGTGCATGATTACTTTCTACAATCTACTTTTAGGAGTGATTTCAAGTTGCATAATAAGGTGATTGAGATGTATGGGAATTGTAAAAGTATGACTGATGCACGTAGGGTGTTTGATCATATGCCTAACAGAAATATGGATTCTTGGCACATGATGATTCGTGGCTACGCGAGTAGTACTATGGGAGATGAGGGTTTGCAGTTATTTGAGCAGATGAATGAACTTGGTTTGGAGATAACTTCAGAGACTTTGCTTGCGGTGTTATCAGCTTGTGCCAGTGCAGAGGCTGTGGAGGAAGGTTACATGTATTTGGAATCCATGAAAAGCAAGTATGGAATTGAACCAGGAGTAGAGCACTATATGGGGCTTTTGGATGTTCTTGGACAATCTGGATACCTCAAAGAAGCTGAGGAGTTTATTGAGAACCTGCCATTTGAGCCTACAGTGACAGTATTGGAGACACTCAAGAGTTATGCTCGTATTCATGGAGATATTGATCTTGAAGACCATTTTGAGGAGTTGATAGTTAGTCTTGACCCATCAAAGGCTGTTGTCAATAAGTTCCCTACGCCGCCTCCCAAAAAGTATACTGCAATTAGCATGCTGGATGGCAGGAACAGAATCATTGAGTATAAGAATCCTACTCTTTACAAGGATGATGAGAAGTTGAAGGCTTTGAGTAGTATGAAAGACGCTGGATATGTTCCTGATACAAGATATGTTCTTCACGACATTGATCAGGAAGCTAAGGAGCAGGCTTTGCTATACCACAGTGAACGTTTAGCGATTGCCTATGGTCTTATTAGTACTCCTCCTAGAACACCTCTTAGGATTATCAAGAACCTTCGTGTCTGTGGTGACTGTCACAATGCCATCAAGATCATGTCTAGGATTGTAGGTAGGGAACTGATTGTCAGAGATAACAAAAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGGTGA 1674 0.3973 MASFPLIQRARTTMFSLKLRTNYIYGNNYFFKTLSTSAIPNDYGRFPHQPPPPSDHNNTPFQPPQQHFNHHNQFPHRNNQNVQQGRFPPQQNWNPQNRPPPPQNPNFRPPPSPPQNPNFRPPIRQNPNFQPPNNPNRSNNQNQWNPQNGNPNQFQNPNNQVQNPNSQFQNPKDSVQEQAPPPPSIVDLIRFCREGKVKEALELMEKGIKADADCFDLLFELCGKSKSVEDAKKVHDYFLQSTFRSDFKLHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYASSTMGDEGLQLFEQMNELGLEITSETLLAVLSACASAEAVEEGYMYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIENLPFEPTVTVLETLKSYARIHGDIDLEDHFEELIVSLDPSKAVVNKFPTPPPKKYTAISMLDGRNRIIEYKNPTLYKDDEKLKALSSMKDAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03347 557 MobiDBLite consensus disorder prediction 60 92 - -
Tsu02g03347 557 Pfam DYW family of nucleic acid deaminases 465 557 IPR032867 GO:0008270
Tsu02g03347 557 Gene3D Tetratricopeptide repeat domain 186 343 IPR011990 GO:0005515
Tsu02g03347 557 MobiDBLite consensus disorder prediction 93 129 - -
Tsu02g03347 557 Pfam PPR repeat 280 309 IPR002885 -
Tsu02g03347 557 Pfam PPR repeat 191 206 IPR002885 -
Tsu02g03347 557 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Tsu02g03347 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 552 - -
Tsu02g03347 557 MobiDBLite consensus disorder prediction 45 59 - -
Tsu02g03347 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Tsu02g03347 557 PANTHER OS07G0578800 PROTEIN-RELATED 6 552 IPR045215 GO:0003723|GO:0009451
Tsu02g03347 557 MobiDBLite consensus disorder prediction 42 184 - -
Tsu02g03347 557 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03347 Tsu-Chr2 37441739 37443959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03347 192 557 Glycoside Hydrolase AT3G49170 35.910 5.93e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03347 - - lang:109333233 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03347 02 37441739 37443959 Tsu02g03347 02 37441739 37443959 ECH