Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03345 ATGTCAAGGACAAGTTTTCTTGATTTCCAATACAACCTCACGAAGAGAAAGTACCTGAGGAAGCCGTCACGTCTATTCTCGAGGGACAGACAAAACTCTGGAGTGAGTCTGCTCTCAAATAACAGACAGAATTCTGGGATGAAAAACATTTTTCAGCCTAGCCTTGATGAGATGAAGATGGTGTTTGACAAATTTGATTCCAATAAAGATGGGAAAATATCTCAACAGGAGTACAAAGCTACTCTAAAATCTCTAGGCATGGGGAAATCGGTTAACGAAGTGCCGAATATTTTCCGGGTGGTTGATTTAGATGGAGATGGATTTATCAATTTCGAAGAATTTATGGAGGCTCAGAAGAAGGGTGGTGGGGTTAGGTCGTTGGATATACAGAGTGCGTTTCGAACATTTGATATGAATGGTGATGGGAAAATAAGTGctgaagaaattaaagaaatgtTGTGGAAGCTGGAAGAGAGGTGCAGCCTAGAGGACTGCAGGCGAATGGTAAGAGCAGTGGATACTGATGGAGATGGCATGGTTGACATGAACGAGTTTGTGGCCATGATGACTCAATCCATGAGGCATGTTTGA 591 0.4129 MSRTSFLDFQYNLTKRKYLRKPSRLFSRDRQNSGVSLLSNNRQNSGMKNIFQPSLDEMKMVFDKFDSNKDGKISQQEYKATLKSLGMGKSVNEVPNIFRVVDLDGDGFINFEEFMEAQKKGGGVRSLDIQSAFRTFDMNGDGKISAEEIKEMLWKLEERCSLEDCRRMVRAVDTDGDGMVDMNEFVAMMTQSMRHV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03345 196 CDD EFh 128 190 IPR002048 GO:0005509
Tsu02g03345 196 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
Tsu02g03345 196 ProSiteProfiles EF-hand calcium-binding domain profile. 128 159 IPR002048 GO:0005509
Tsu02g03345 196 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 194 - -
Tsu02g03345 196 Gene3D - 8 122 - -
Tsu02g03345 196 SMART efh_1 57 85 IPR002048 GO:0005509
Tsu02g03345 196 SMART efh_1 164 192 IPR002048 GO:0005509
Tsu02g03345 196 SMART efh_1 93 121 IPR002048 GO:0005509
Tsu02g03345 196 SMART efh_1 128 156 IPR002048 GO:0005509
Tsu02g03345 196 CDD EFh 57 117 IPR002048 GO:0005509
Tsu02g03345 196 ProSitePatterns EF-hand calcium-binding domain. 173 185 IPR018247 -
Tsu02g03345 196 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Tsu02g03345 196 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 194 - -
Tsu02g03345 196 SUPERFAMILY EF-hand 55 191 IPR011992 -
Tsu02g03345 196 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Tsu02g03345 196 ProSiteProfiles EF-hand calcium-binding domain profile. 160 195 IPR002048 GO:0005509
Tsu02g03345 196 Gene3D - 125 196 - -
Tsu02g03345 196 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Tsu02g03345 196 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Tsu02g03345 196 Pfam EF-hand domain pair 128 189 IPR002048 GO:0005509
Tsu02g03345 196 Pfam EF-hand domain pair 56 117 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03345 Tsu-Chr2 37430434 37431024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03345 1 190 EF-hand Containing Proteins AT2G15680 60.526 9.92e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03345 K13448 - gmx:100803158 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03345 02 37430434 37431024 Tsu02g03345 02 37430434 37431024 ECH