Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03304 ATGGAGATCGCTCACGAACCACCGCCTTCTCTCGACGGAACCCCTATCCCTGCCAATACCATCGCCAACTCTCCCTCTTCTTCTTATCCTTCCTCTTCCGCTTCGTCTCCACGCGTTTCCAAGGGAAAGGAGATCATCGAAACCTCCACATCGACGGCGCCGCCATCTGCAAAGTACGATGacgatgatgaagatgaagaggatGTTTGCCGAATATGCCGGAACCCTGGTGACGCCGATAATCCTCTTCGGTATCCGTGTGCGTGTAGCGGTAGTATCAAATTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCATAGCAACGCTCGTCAATGCGagGTCTGCAAGCATCCATTCTCGTTCTCTCCTGTATATGCAGAGAATGCACCTGCTAGGTTGCCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCTTGCCATGTCTTGCAATTCTTTTTGCGTCTGAGTTTTGTGCTATCTGTGTGGCTCTTGATTATACCTTTCATAACATTCTGGATATGGCGTTTAGCTTTTGTGAGGAGTTTGGGTGAAGCTCAGAGGTTATTCTTAAGCCATTTATCAACTGCAGTTATTCTGACTGATTGTCTCCATGGCTTCCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGATGATGAAGTGGACAGAAATGGTGCTCGAATTGCTAGAAGGCCTGCTGGGATAGCTAATCGTAATGCTAATGGTGATGCAAATGGCGAAGATGCTGGTGGAGCACAAGGAGTTGCAGGGGCAGGTCAAGTAATTAGAAGAAATGCTGAAAATGTTGCTGCTCGATGGGAGATGCAAGCAGCACGTCTTGAGGCTCACGTTGAACAGATGTTTGATGGTCTGGATGACGCTGATGGAGCAGAAGATGTACCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTTGCAAGCAATATGATTTTCCTTGGGGTTGTAATATTTGTGCCCTTCTCATTAGGTCGCATAATTCTTCATTATCTATCATGGTTCTGTTCAACTAGTAGTGGTCCTGTGTTATCAGTGATGGTCCCACCTACAGACACTTCTCTTTCCCTTGCAAATATTACATTGAAAAATGCATTAACAGCTGTTCAAAATTTATCAACCGATACTCAAGAAAGTGGGTCAATTGGTCAGATTGCAGAAATGCTAAAAGTGAATGCAAGTAAtttgagtgaaatgtcaaacaACATAAATGCATCTGTTTCAGCTGATCTCTTGAATGGAGGGTCAATTGGAACTTCCAGGATTTCTGATGTTACTACTCTGGCTATTGGATATATTTTCATATTGACTCTAATTTTTTGCTACTTCGGTATTGTTGCGTTAATTCGTTACACAAAGGGCGAACCTTTGACTACCGGAAGATTTTATGGTATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGACAGTTTTTAGCAGCAATGAGGCATTTGATGACCATGGTAAAGGTTGCTTTCCTATTAGTTATTGAACTAGGGGTATTTCCCCTGATGTGTGGGTGGTGGCTCGATGTTTGTACGATACAGATGTTCGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCTCCTTTAGCGAGCTCATTGGTTCATTGGGTCGTAGGGATCGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTCTTGCGGAACGGGGTTTTGTACTTCCTTCGGGATCCCGCTGATCCAAACTACAATCCATTCCGTGATCTGATAGATGATCCTGTGCACAAACATGCTCGTAGGGTTTTGTTATCTGTTGCTGTTTATGGGAGTTTGATTGTTATGCTGGTATTTTTGCCAGTTAAACTTGCAATGCGGATGGCTCCTTCCATTTTTCCACTTGAAATACTGCTATCTGATCCGTTCACCGAAATTCCGGCTAACATGCTTCTCTTTCAGATCTGTATACCATTTGCTATTGAACATTTTAAATTGAGGACAACTATTAAATTCCTACTTCGTTATTGGTTTACGGCAGTTGGTTGGGCACTTGGTTTAACTGATTTCTTACTGCCTAGTCCTGATGAGAATTGGAATCAAGAAAATGGGAATGGGGAGCGAGGTAGGCAGGAAAGATTACAGATTGCACAAGCAGGAGTACACGATCAGGGTGTAGTTCCATTTGCAGGCGATGATTTGAATAGAGTCCCTAATGCAGATGCTGGAGAGGATTATGACAATGACGAGCAATCTGATTCTGACAGTTACGCCTTTGTACTTCGCATTGTTCTTTTACTGGTCATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCCCTGGTAGTTGTACCAATATCACTTGGAAGGATACTTTTCAATTCCATTCCTCGTCTTCCTATAACTCATGGCATTAAGTGCAACGATCTGTATGCCTTCATCATTGGAAGTTATGTGATCTGGACTGCTGTTGCCGGAGTTAGATACTCAATTGAGCAAGTTAGAAAAAGGAGGACTTCAGTTTTGTTGAACCAGATATGGAAGTGGTGTAGCATTGTTGTCAAGAGTTCTGCACTTTTGTCTATATGGATATTTGTCATCCCAGTGCTAATTGGGCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGTCCAGTGTTCCTCCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTAATGGATGAAAGTTGGCGAGTAAAGTTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTTTGGGTCCTTCGGGAGATTGTACTTCCAATCATAATGAAACTACTGACAGCATTATGTGTACCTTATGTTTTGGCTAGAGGTATGTTTCCAGCGCTTGGGTACCCATTGGTGGTCAATTCGGCTGTCTATCGATTTGCATGGTTGGGATGCCTCTCTTTCAGTTTCGTGTGCTTTTGTGCCAAGAGATTTCACGTCTGGTTCACAAATCTCCACAATTCAATACGTGATGACCGATATCTTATTGGCCGGAGGTTGCATAACTTTGGAGAACATGTTGAGAAGGCAAACGAAGCAGCAGCAACTTCTACAGGAGTGCAGGATACTATTTTACTGgatacaaatttaaatcaacAAGATCGTGATGCAGATGTTGGTCTACGGTTGAGGCACATAAATCAACAGGCGGGCTGA 3345 0.4263 MEIAHEPPPSLDGTPIPANTIANSPSSSYPSSSASSPRVSKGKEIIETSTSTAPPSAKYDDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADRDDEVDRNGARIARRPAGIANRNANGDANGEDAGGAQGVAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFCSTSSGPVLSVMVPPTDTSLSLANITLKNALTAVQNLSTDTQESGSIGQIAEMLKVNASNLSEMSNNINASVSADLLNGGSIGTSRISDVTTLAIGYIFILTLIFCYFGIVALIRYTKGEPLTTGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLEILLSDPFTEIPANMLLFQICIPFAIEHFKLRTTIKFLLRYWFTAVGWALGLTDFLLPSPDENWNQENGNGERGRQERLQIAQAGVHDQGVVPFAGDDLNRVPNADAGEDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALVVVPISLGRILFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRKRRTSVLLNQIWKWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGMFPALGYPLVVNSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKANEAAATSTGVQDTILLDTNLNQQDRDADVGLRLRHINQQAG 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03304 1114 ProSiteProfiles Zinc finger RING-type profile. 70 117 IPR001841 -
Tsu02g03304 1114 SUPERFAMILY RING/U-box 65 121 - -
Tsu02g03304 1114 PANTHER SSM4 PROTEIN 58 1056 - -
Tsu02g03304 1114 MobiDBLite consensus disorder prediction 1 63 - -
Tsu02g03304 1114 CDD RING_CH-C4HC3_MARCH6 69 118 - -
Tsu02g03304 1114 SMART ringv_2 69 117 IPR011016 GO:0008270
Tsu02g03304 1114 Coils Coil 287 307 - -
Tsu02g03304 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 128 IPR013083 -
Tsu02g03304 1114 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 58 1056 - -
Tsu02g03304 1114 MobiDBLite consensus disorder prediction 16 56 - -
Tsu02g03304 1114 ProSiteProfiles Zinc finger RING-CH-type profile. 62 123 IPR011016 GO:0008270
Tsu02g03304 1114 Pfam RING-variant domain 70 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03304 Tsu-Chr2 36965738 36972867 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03304 K10661 - gmx:100813205 1941.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03304 02 36965738 36972867 Tsu02g03304 02 36965738 36972867 ECH