Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02885 ATGATGAATGTGTTTGAAATTCGCAAGGATCAAAGGGCAGAAGGTCCTGCAACCATCTTAGCTATAGGCACCGCAAATCCACCAAACTGCTTTGAACAAAGCACATATCCTGATTTCTATTTTAGAATCACTAACAGTGAGCACAAGACCGAACTCAAGGAAAAATTTCAGCGCATGTGTGATAAATCTATGATCAAGAAGAGATACATGTACCTAACAGAAGAGATTTTAAAAGAGAATCCTAATATGTGCACTTATATGGCACCTTCTTTGGATACAAGGCAAGACATGGCGGTGGTAGAGGCACCTAGACTAGGGAAGGAGGCAGCAATGACGGCTATAAGAGAATGGGGTCAACCAAAGTCAAAGATTACACACTTGATATTTTGCACCATAAGTGGTGTAGACATGCCTGGTGCCGATTACCAACTCACAAAACTCTTAGGTCTTCACCCATTTGTAAAAAGGTATATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTACTTCGTTTGGCCAAGGACTTGGCCGAGAACAACAAAGGTGCTCGTGTGTTGGTCGTTTGTTCTGAAGTTACTGCAATCACATTTTGTGGCCCGAGTGATAATCACTTGGACAATCTTGTTGGACAAGCACTATTTGGAGATGGAGCCGCTGCTGTCATTGTTGGCTCTGACCCGATACCAGAAATCGAGAAGCCTTTGTTTCAGCTAATTTGGACTGCACAAACAATCGCTCCAGATAGTGAAGGAGCTATTTGTGGTCACCTTCGTGAAGTTGGGCTATCATTTCATCTTCGTAAGGATGTTCCTGATATTGTCTCAAAGAATATTGATAAAGCACTCGTTGAAGCATTCCAACCATTAGACATTTCTGATTACAACTCAATATTTTGGATTGCTCATTCAGGTGGACCTGCAATTCTAGACAAAATTGAGCAAAAGTTATCATTAAAACCTGAAAAGATGAGGGCCACAAGGAAAATGCTTAGTGAGTATGGTAATATGTCAAGTGCATGTGTATTATTCATTTTAGATGAGATGAGAAAGAAATCTGTTCAAGATGGCCTAAAGACCACTGGAGAAGGTTTTGAATGGGGTGTGTTGCTAAGCTTTGGACCAGGACTTACAATTGAAACAATTGTCCTACGTAGTGTGGCTATATGA 1170 0.4128 MMNVFEIRKDQRAEGPATILAIGTANPPNCFEQSTYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNMCTYMAPSLDTRQDMAVVEAPRLGKEAAMTAIREWGQPKSKITHLIFCTISGVDMPGADYQLTKLLGLHPFVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAITFCGPSDNHLDNLVGQALFGDGAAAVIVGSDPIPEIEKPLFQLIWTAQTIAPDSEGAICGHLREVGLSFHLRKDVPDIVSKNIDKALVEAFQPLDISDYNSIFWIAHSGGPAILDKIEQKLSLKPEKMRATRKMLSEYGNMSSACVLFILDEMRKKSVQDGLKTTGEGFEWGVLLSFGPGLTIETIVLRSVAI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02885 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Tsu02g02885 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Tsu02g02885 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 388 IPR011141 GO:0009058|GO:0016747
Tsu02g02885 389 Pfam Chalcone and stilbene synthases, N-terminal domain 6 228 IPR001099 -
Tsu02g02885 389 PANTHER CHALCONE SYNTHASE 7 2 388 - -
Tsu02g02885 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Tsu02g02885 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Tsu02g02885 389 CDD CHS_like 16 384 - -
Tsu02g02885 389 Gene3D - 236 389 IPR016039 GO:0016746
Tsu02g02885 389 Gene3D - 1 235 IPR016039 GO:0016746
Tsu02g02885 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02885 Tsu-Chr2 31612590 31615585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02885 157 387 Miscellaneous Gene Families AT3G52160 28.205 6.20e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02885 K00660 - gmx:100170701 689.493