Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02873 ATGGCAGCTTATTTAAAACTGACACTTACAACACGATTTTCTGTCTATGTCACTACAAGACAAGGTTTTGCTTCAGGAGTTGTAAATCTTGGTGAAATAGAAGTTTTCACGGTCACAAGATTTGAGTTCATTTGGAGCAGTGTTATACTGGACCCGAAAAAACCTGTTATATTCTACAAACCTGTGGAAATACCTAACAGATTCCATATCCTTGGTCATTATTGTCAACCCAGCGACAAGCCTTTATGGGGTTATGTACTTGTTGCAAAGGAAACGGGGACTCGATTGCCCGAAACTAATGAGGAAAAGTCACATTTGAGAAATCCCCTTGATTTTAAGTTAGTTTGGAGTTCAAATGCACCTGGTAATCTGAAAATTTCAAGTGGATGTGGTTATTTCTGGCTACCTGAACCTCCTAAAGGTTACAAGGTGGTTGGCTACTTTGTTACGGAAAAACCCGACAAGCTTGAGTTAGATGAAATGTGTTGTGTTCGTGCCGACCTCACTGATAAATGTGAACCTTACTGCGAAATATTTGTTGTTGGATCTAGAATTCCGGGGGTTTCCTTCCAGGTAAGGAGCTCGAGACCTTGTGATCGTGGCATGCTAGGAAAAGGCGAGATAATTGAAACAGCTGGCTCAAATTTACCACATGGAGGATCAAATTATGGCGAATTTTGGATAGACCTACCGAGTCACGACGATATAAGAGATTTTCTCAAACACACAGACTTAAAAAGTGCGAAGCTTTATGTTCATGTGAAGCCAGCTCTTGGTGGGACTTTTACCCACATAGCAATGTGGATATTTGCTCCCTTCAATGGACCAGCCACTCTGAAAATAGGAATTAAGAATATACATTTGAGCAAGATCGATGAGCATGTTGGCGACTGGGAGCATTACACACTTCATAATTATATTGAAGGAAATAAAGCTATTGTTTACTCGTCAAAGAGTGAACCTGCAAGTTACCCTCATCCTGGAACCTATATCCAAGGGTCTTCAAAACAAGCTGAATATCTAGAAAATGTCATCGTTGAGCCTAATTGGTTGCAGTTTATGAGAAAGTGGGGTCCCAAAATTGTTTATGATTCAAAAACTGAGCTGGATAAGTTAATGAGAAAGTGGGGTCCTAAAATTGTTTATGATTCAAAAACTGAGCTGGATAAGATTCTCAATCAGCTTCCTTGCATGCTTCACCATTCAATGAGAAACTTGTTTAACATGTTTCCAGTGGAGCTGTATGGTGAATATGGTCCTACTGGaccaaaaggaaaaacaattggATAA 1290 0.3922 MAAYLKLTLTTRFSVYVTTRQGFASGVVNLGEIEVFTVTRFEFIWSSVILDPKKPVIFYKPVEIPNRFHILGHYCQPSDKPLWGYVLVAKETGTRLPETNEEKSHLRNPLDFKLVWSSNAPGNLKISSGCGYFWLPEPPKGYKVVGYFVTEKPDKLELDEMCCVRADLTDKCEPYCEIFVVGSRIPGVSFQVRSSRPCDRGMLGKGEIIETAGSNLPHGGSNYGEFWIDLPSHDDIRDFLKHTDLKSAKLYVHVKPALGGTFTHIAMWIFAPFNGPATLKIGIKNIHLSKIDEHVGDWEHYTLHNYIEGNKAIVYSSKSEPASYPHPGTYIQGSSKQAEYLENVIVEPNWLQFMRKWGPKIVYDSKTELDKLMRKWGPKIVYDSKTELDKILNQLPCMLHHSMRNLFNMFPVELYGEYGPTGPKGKTIG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02873 429 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 206 303 - -
Tsu02g02873 429 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 372 426 - -
Tsu02g02873 429 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 20 206 - -
Tsu02g02873 429 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 338 372 - -
Tsu02g02873 429 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 305 336 - -
Tsu02g02873 429 PANTHER - 206 303 - -
Tsu02g02873 429 PANTHER - 305 336 - -
Tsu02g02873 429 PANTHER - 372 426 - -
Tsu02g02873 429 Pfam Vacuolar protein sorting-associated protein 62 372 426 IPR009291 -
Tsu02g02873 429 Pfam Vacuolar protein sorting-associated protein 62 206 303 IPR009291 -
Tsu02g02873 429 Pfam Vacuolar protein sorting-associated protein 62 19 207 IPR009291 -
Tsu02g02873 429 Pfam Vacuolar protein sorting-associated protein 62 338 373 IPR009291 -
Tsu02g02873 429 Pfam Vacuolar protein sorting-associated protein 62 305 336 IPR009291 -
Tsu02g02873 429 PANTHER - 20 206 - -
Tsu02g02873 429 PANTHER - 338 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02873 Tsu-Chr2 31456757 31458418 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02873 - - gmx:100793026 283.493