Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02871 ATGGCTGCGGAGAAGCTCAGAGATTTGACACAACCGATTGATGTACCTTTGCTCGATGCTACCGTCGCCGCCTTCTATGGCACTGGATCTAAGCAAGAGAGAAGTGCTGCTGATTCAATTTTGCGGGACTTGCAAAATAATCCTGATATGTGGCTTCAAGTTATGCATATTTTGCAGAATACTCAAAATTTGAATACCAAGTTCTTTGCCTTACAGGTTCTAGAAGGTGTAATTAAGTACAGATGGAATGCATTACCTGCTGAGCAGCGAGATGGGATGAAAAATTTCATCTCAGATATTATTGTACAGCTTTCTAGCAATGAGGCCTCATTTCGAATGGAAAGGTTGTATGTCAACAAACTCAACATTATATTAGTTCAGATTTTGAAGCATGAGTGGCCAGCAAGATGGAGAAGCTTCATTCCTGATCTTGTTTCAGCAGCTAAAACTAGTGAAACAATCTGCGAGAATTGCATGGCTATATTGAAACTTTTGAGTGAAGAGGTTTTTGATTTCTCGAGAGGAGAAATGACACAGCAGAAGATAAAAGAGCTTAAACAATCATTGAACAGTGAATTTCAACTCATACATGAGTTATGCCTATATGTGCTATCAGCATCCCAAAGGGCCGAGCTCATACGTGCTACACTGTCCACATTGCATGCCTTCTTATCATGGATTCCCTTGGGTTATATATTTGAATCACCGTTGCTTGAGACGCTTCTAAAGTTTTTCCCGGTTCCAGCATATCGGAACCTAACGTTGCAATGTTTAACAGAGGTGGCATCCCTTCAATTTGGGAGTTTTTATGATGTGCAGTATGTCAAGATGTATGGCATATTCATGGGTCAATTGCAGAGCATACTCCCGCCGACGACAAATATACCCGAGGCATATGCAAATGGCTCTACTGAAGAAcaaTCATTTATACAGAACCTGGCACTGTTCTTCACCTCATTTTATAAGGTTCACATCCGCATCTTGGAATCCACTCAAGAGAATATATCAAATTTGCTATTGGGCCTTGAATATCTTATCAGCATTTCATATGTAGAGGATACCGAGGTCTTTAAGgTTTGTTTGGACTACTGGAATTCCTTGGTGTCAGAGCTGTTTGAGCCACACCGAAGTTTGGATACCCCTGCAGCTTCTGCAAACATGATGGGGCTTCAGGTACCAGCAATGCTTCCTGGTATGGTTGATGGGCATGGTTCTCAGCTTCTTCAACGTCGGCAGCTTTATGCTGGTTCCATGTCGAAGTTGAGAATGCTTATGATATGTCGAATGGCTAAACCTGAAGAGGTTCTCATagttgaagatgaaaatggGAATATTGTCCGTGAAACCTTGAAGGACAATGATGTTCTTGTTCAATATAAGATTATGAGGGAGACTCTTATTTACTTGTCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGGAAATTAAGCAAACAACTCAGTGGCGAGGATTGGACATGGAACAATTTGAATACACTCTGCTGGGCAATTGGATCTATATCTGGTTCCATGATAGAAGAACAGGAAAACAGGTTTTTGGTTATGGTAATTCGTGATTTATTAAATCTGTGTGAGATCACGAAGGGAAAAGATAACAAAGCAGTTATTGCAAGTAATATCATGTATGTTGTTGGCCAATATCCACGGTTTTTAAGAGCTCACTGGAAGTTTCTTAAAACTGTTGTTAACAAGTTGTTCGAGTTTATGCATGAGACACATCCTGGAGTTCagGATATGGCGTGTGACACTttcttgaaaatagttcagaaGTGCAAGCGAAAGTTTGTGATCACCCAGGTTGGTGAAAATGAACCATTTGTATCTGAACTTCTATCAGGCCTTCCGATCACTATTGCAGATCTTGAACCCCATCAGATACACTCCTTCTATGAATCTGTTGCTCATATGATTCAAGCAGAGTCTGATGCACAGAAGAGAGATGAATATATTCAGCGTTTGATGCAGCTCCCAAATCAGAAATGGATGGAAATTATAGGTCAGGCACATCAAAATGTTGAGTTTTTGAAGGATCAAGATGTAATAAGGACGGTGCTTAACATATTACAGACAAATACAAGTGTTGCATCTTCTTTAGGGACATTTTTCCTGCCCCAAATCTCATTGATCTTCTTGGACATGTTGAATGTGTACAGAATGTACAGTGAGCTTATTTCAAAAAGTATTTCAGAAGGGGGACCTTATGCGTCTAAAACATCTTATGTGAAACTTCTACGTTCGGTTAAGAGGGAGACCCTTAAACTGATTGAGACATTCTTGGATAAGGCTGAAGATCAACCACAGATTGGAAAACAATTTGTGCCGCCAATGATGGATCCTGTTCTGGGAGATTATGCTAGGAATGTTCCTGATGCAAGGGAATCAGAGGTTTTGTCCCTTTTTGCCACAATAGTAAACAAGTATGCTTCTTTCtccattttcttttttcctGTTCATTTATTTCGTTGGTTTGTGCTATGA 2505 0.3936 MAAEKLRDLTQPIDVPLLDATVAAFYGTGSKQERSAADSILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPAEQRDGMKNFISDIIVQLSSNEASFRMERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRAELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNLTLQCLTEVASLQFGSFYDVQYVKMYGIFMGQLQSILPPTTNIPEAYANGSTEEQSFIQNLALFFTSFYKVHIRILESTQENISNLLLGLEYLISISYVEDTEVFKVCLDYWNSLVSELFEPHRSLDTPAASANMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGSMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMIEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLSGLPITIADLEPHQIHSFYESVAHMIQAESDAQKRDEYIQRLMQLPNQKWMEIIGQAHQNVEFLKDQDVIRTVLNILQTNTSVASSLGTFFLPQISLIFLDMLNVYRMYSELISKSISEGGPYASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYASFSIFFFPVHLFRWFVL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02871 834 PANTHER EXPORTIN 1A-RELATED 4 819 - -
Tsu02g02871 834 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Tsu02g02871 834 Pfam CRM1 / Exportin repeat 2 410 477 IPR041235 -
Tsu02g02871 834 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Tsu02g02871 834 PANTHER EXPORTIN 1/5 4 819 IPR045065 GO:0005049|GO:0006611
Tsu02g02871 834 Pfam Importin-beta N-terminal domain 39 103 IPR001494 GO:0006886|GO:0031267
Tsu02g02871 834 Pfam Exportin 1-like protein 115 258 IPR013598 -
Tsu02g02871 834 Gene3D - 1 825 IPR011989 -
Tsu02g02871 834 Pfam Chromosome region maintenance or exportin repeat 338 372 IPR041123 -
Tsu02g02871 834 SUPERFAMILY ARM repeat 22 816 IPR016024 -
Tsu02g02871 834 SMART CRM1_C_2 714 831 IPR014877 GO:0005049
Tsu02g02871 834 Pfam CRM1 C terminal 714 817 IPR014877 GO:0005049
Tsu02g02871 834 Pfam CRM1 / Exportin repeat 3 491 540 IPR040485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02871 Tsu-Chr2 31432786 31444044 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02871 K14290 - gmx:100802384 1550.41