Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02856 ATGACATCGAAATCGTTCAAACTAAGCAGATCGTCCCTGTCAGCAACTTCTGATGCATCTGAAACACAGAAGCCTCCTTTACCTCCAACTGTAACATTTGGCCGAAGAACTTCCTCGGGTCGATACGTCAGTTACTCCAGAGATGATCTTGATAGTGAGTTAGGAAGTAATGACTACATGAATTATACAGTGCATTTACCACCAACTCCTGATAACCAACCTATGGATACGACAATCTCGCAGAAAGTTGAGGAGCAGTATGTGTCAAGTTCACTATTCACAGGAGGATTCAATAGCATTACTCGAGCACATCTGATGGATAAGGTGACCGAGTCTGAAGTAAACCATCCACAGATGGCTGGTGTAAAAGGGTCTGCATGTGGTGTTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCTTGTGAGTGTGATTATAAGATATGTAGAGATTGCTATATTGATGCGGTTAAAACAGGAGATGGAATGTGCCCCGGATGCAAAGAGCCATATAAGAACACAGAACTTGATGAATTGGCTGTGGATAATGGAAGGCCACTTCCACTTCCTGCACCAGGCGGGGTGTCTAAAATGGAGAGAAGATTGTCCTTGATGAAGTCAACAAAGTCAGCATTGATGAGAAGTCAAACTGGAGATTTTGATCACAATCGGTGGCTCTTTGAGACAAAGGGTACCTATGGTTATGGCAATGCTATATGGCCAAAGGAAGGGAATTTTGGAAATGCAaaagatgatgatgttgttgagccAACTGAGTTGATGGGCAGACCATGGAGACCACTTACGCGGAAATTGAAGATACCTGCGGCCATTCTCAGCCCATATCGGCTCATCATTTTTATTCGTATGGTTGCTCTTGTACTGTTCCTGCATTGGAGGATCACGCACAAAAATACTGATGCAATCTGGTTATGGGGCATGTCTATAGTTTGTGAAATATGGTTTGCTTTCTCTTGGCTTCTTGATCAATTGCCCAAGCTATGCCCAATAAATCGTTCTACAGATCTTAACGTTCTGAAGGAAAAATTTGAAATGCCAACACCTGACAATCCTACAGGAAAGTCTGATCTACCAGGCATAGATGTCTTTGTCTCAACTGCTGATCCTGAGAAAGAACCGCCGCTTGTCACAGCAAACACCATATTGTCTATTTTAGCTGCTGATTATCCAGTTGAGAAGCTTGCATGCTATGTTTCTGATGACGGGGGTGCACTTTTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGTGTGGGTTCCATTCTGCCGCAAACATGATATAGAGCCTAGGAATCCTGAATCATACTTCAACTTAAAGAGAGATCCATACAAAAACAAAGTGAAACCTGATTTTGTGAAGGATCGTAGAAGGCTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATTAATGGTTTGCCTGACTCTATCCGTCGTAGGTCAGATGCTTTTCATGCAAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAAAATAGGGGAGATGAACCTGTTGAGCCTATAAAGGTTCCAAAAGCAACATGGATGGCTGATGGATCTCATTGGCCAGGGACTTGGTTGAACACTTCAGCTGAGCACTTAAAGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAACCTCCAAGTGATGAACCTCTTATCGGAAATGCTGATGATGCAAAGCTTATTGACTTGACTGACGTTGATATCCGTCTTCCCCttcttgtttatgtttctaGAGAGAAACGCCCAGGTTATGATCACAACAAAAAAGCTGGGGCCATGAATGCATTGGTTAGAGCCTCAGCCGTCATGTCAAATGGTCCTTTTATACTCAATCTCGACTGTGACCACTACATCTACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGTGGTGACCGCCTCTGCTATGTCCAGTTCCCTCAAAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCTAATCACAACACTGTCTTCTTTGATGTTAACATGAGAGCCCTTGATGGACTGCAAGGGCCAGTCTATGTAGGAACTGGTTGTCTGTTTAGAAGGGTTGCTCTTTATGGTTTTGACCCTCCGCGTGCCAAAGAAGACCACGCAACTTTCTGTAGTTGTTGCTTTGGGCGTAATAAGAAGAAACATTCCAACACCTCAGAAGAGAACCGGGCACTAAAGATGGGTGATTCTGACGATGAAGAGATGATGAATCTTTCATTCTTCCCTAAGAAATTTGGGAACTCAAGTATCCTTATTGATTCAATTCCAGTGGCAGAGTTCCAAGGTAGGCCACTTGCTGATCACCCTGCTGTGAAAAATGGACGCCGTCCTGGTGCTCTCACCATTCCACGTGATCCTCTTGAAGCATCAATAGTGGCAGAAGCCATCAGTGTGATCTCATGTTGGTATGAGGATAAAACCGAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTCACTGGTTATAGGATGCATAATAGAGGATGGAAATCAGTTTACTGTGTGACCAAGCGTGATGCCTTCCGCGGAACTGCTCCCATCAATCTAACTGATAGGCTGCATCAGGTTCTTAGATGGGCTACTGGCTCAGTTGAAATATTCTTCTCCAGAAACAATGCAATTATGGCCAGCCCAAGAATGAAATTTCTTCAAAGGATTGCATATCTTAATGTTGGAATTTATCCAttcacttctttttttcttattgtCTATTGCTTCCTTCCTGCACTGTCCCTCTTCTCAGGACAGTTCATTGTTCAAACACTCAATGTCACTTTCCTTGCTTACCTCTTGGCTATTACCGTGACTTTGTGCATTCTTGCCGTGCTTGAGATTAAATGGTCAGGAATTGAGCTGGAAGAATGGTGGAGAAACGAACAGTTTTGGTTGATTGGAGGTACTAGTGCACATCTAGCTGCCGTGCTTCAAGGTTTACTAAAAGTTGTAGCAGGTATTGAAATTTCATTCACCTTGACTTCAAAATCCGGCGGTGATGATATTGACGACGAGTTTGCTGATCTGTATATTGTGAAATGGTCATCGCTTATGATACCACCAATCACAATCATGATGGTTAACTTAATAGCAATAGCTGTTGGAGTTAGCAGAACCATATACAGTACCATACCGCAGTGGAGTCGTTTACTAGGCGGTGTTTTCTTCAGCTTTTGGGTGTTGGCTCATCTCtacccttttgcaaaaggtttgATGGGAAGAAGAGGGAGGACACCTACCATTGTTTTTGTATGGTCAGGTCTAATAGCAATCATAATATCACTCCTATGGGTGGCTATCAATCCACCAGCCGGTACCGACCAAATAGGTGGTTCATTCCAGTTCCCTTGA 3429 0.4275 MTSKSFKLSRSSLSATSDASETQKPPLPPTVTFGRRTSSGRYVSYSRDDLDSELGSNDYMNYTVHLPPTPDNQPMDTTISQKVEEQYVSSSLFTGGFNSITRAHLMDKVTESEVNHPQMAGVKGSACGVPGCDSKVMSDERGVDILPCECDYKICRDCYIDAVKTGDGMCPGCKEPYKNTELDELAVDNGRPLPLPAPGGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGNFGNAKDDDVVEPTELMGRPWRPLTRKLKIPAAILSPYRLIIFIRMVALVLFLHWRITHKNTDAIWLWGMSIVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFEMPTPDNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKLQRQNRGDEPVEPIKVPKATWMADGSHWPGTWLNTSAEHLKGDHAGIIQVMLKPPSDEPLIGNADDAKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRAKEDHATFCSCCFGRNKKKHSNTSEENRALKMGDSDDEEMMNLSFFPKKFGNSSILIDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRDPLEASIVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIMASPRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLAITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDIDDEFADLYIVKWSSLMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIIISLLWVAINPPAGTDQIGGSFQFP 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02856 1142 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Tsu02g02856 1142 Pfam Cellulose synthase 373 1132 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu02g02856 1142 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 34 1140 - -
Tsu02g02856 1142 SUPERFAMILY RING/U-box 112 181 - -
Tsu02g02856 1142 SUPERFAMILY Nucleotide-diphospho-sugar transferases 388 723 IPR029044 -
Tsu02g02856 1142 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 34 1140 - -
Tsu02g02856 1142 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 580 728 IPR029044 -
Tsu02g02856 1142 MobiDBLite consensus disorder prediction 1 39 - -
Tsu02g02856 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02856 Tsu-Chr2 31073906 31077993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02856 2 1142 Glycosyltransferase AT3G03050 83.435 0.0 2010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02856 K20924 - gmx:100792604 2149.78