Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02694 ATGAGAAACCTGTTCGGAACCACAAGATCATTGGCGACCAAATTATTGTTCAATACAACAAAACAACCTCAATTCACACCATCATCATGCACAATTCGACCATATCAAACTATTCCAATGGTCATTGAAACCTCTTCCAGAGGTGAAAGAGCCTATGATATCTTCTCTCGTCTTCTCAAAGAACGAATCATTTGCATCAATGGACCTATCTCTGATGATACTGCTCATGTTGTTGTTGCTCAACTTCTCTTTCTTGAATCTGAAAACCCTTCCAAGCCGATTAATATGTATCTCAATTCCCCTGGTGGTGCTGTTACTGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGATCTCCGATCAACACAATCTGTTTGGGTCAGGCTGCATCCATGGCTTCTCTCCTGTTGAGTGCGGGTGCCAAAGGTCAGAGACGTTCTCTTCCGAATGCAACAGTCATGATTCACCAGCCCTCTGGTGGATACAGTGGCCAGGCAAAGGATATTGCAATTCATACCAAGCAGATTGTTCGAGTCTGGGATGCGTTGAATGAGTTGTACGTCAAGCACACCGGCCAACCACTTGATGTTATTCAGAAGAATATGGATAGGGATTATTTTATGACTGCTGAAGAGGCAAAGGAGTTTGGGATTATTGATGAGGTTATTGATCAAAGACCTATGACTTTGGTTTCTGACGCTGTTGCTGATGAAGGCAAAGATAAAGGTTCGAATTAG 741 0.4265 MRNLFGTTRSLATKLLFNTTKQPQFTPSSCTIRPYQTIPMVIETSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLSAGAKGQRRSLPNATVMIHQPSGGYSGQAKDIAIHTKQIVRVWDALNELYVKHTGQPLDVIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPMTLVSDAVADEGKDKGSN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02694 246 ProSitePatterns Endopeptidase Clp histidine active site. 146 159 IPR033135 -
Tsu02g02694 246 CDD S14_ClpP_2 53 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 Pfam Clp protease 47 226 IPR023562 -
Tsu02g02694 246 ProSitePatterns Endopeptidase Clp serine active site. 124 135 IPR018215 -
Tsu02g02694 246 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 24 245 IPR023562 -
Tsu02g02694 246 SUPERFAMILY ClpP/crotonase 46 228 IPR029045 -
Tsu02g02694 246 Gene3D - 28 231 - -
Tsu02g02694 246 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 24 245 - -
Tsu02g02694 246 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 37 227 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 PRINTS Clp protease catalytic subunit P signature 53 68 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 PRINTS Clp protease catalytic subunit P signature 93 113 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 PRINTS Clp protease catalytic subunit P signature 124 141 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 PRINTS Clp protease catalytic subunit P signature 145 164 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu02g02694 246 PRINTS Clp protease catalytic subunit P signature 202 221 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02694 Tsu-Chr2 28488275 28492243 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02694 K01358 - pop:18099086 384.8