Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02671 ATGGATTATGGACATTATAATTCTGCATTGAATTATTTTAAGATGTTTGAAGGAaatagtaaaaaagaaaatGGTCTTTTGTATTTGAAAATTGCTAAATGTTATCAATCTTTGGGAGAAAGGAAACAAGCAATTATCTATTTTTACAAAgCCCTAGAAACACTACAGGAGGATGTTGAGGCGCGCATAAGTTTGGCATCCCTGCTAGTtgaggaagagaaagaaaatgaagCCATTTCCTTGCTATCTCCTCCAAAGGATTCTGACTCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTGAGGATAAAACTTAAGCTCTGTAACATATTTCAGATTAGAGGGATGCTTAATGATTTTGTGGATGTAAGTTTCCCTTTGGTACATGAGTCGCTGCGTATTGCAACTCCTAGACAACAGAAACCAAACCCAGAATCTCCTTTGTGTAATCTTCACAAAGATGAAGAATACCAGCTAATCATCGATTTGTGCAATGCATTAGCATCCTTACAAAGGTATAAGGAAGCTTTGGAGATTATCAATCTCACTCCTCGTACTTCTCTGTCTGCTGAGAAGAATGAGAAGCTTCAATCTCTTGGAACTCAAATGGCATACAACACCACAGATCCTAAACAAGGTTTTTATTGTGTAAAATCCAATGTTCGACAACATGCACAGAGTGTTGCTGCTTGGAATTCCTACTACAAGGTCATATCAAGATTGGAAAACCGAGATACAGGACACGTCAAATTTGTACATAATATGCAAGTAAATTCCGTAGATTGTGTGCCTCCTATCCTCATTTCTGCGCATCAGTTTACTCGATTTAGCCATCATCAAGACGCGGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCTGAGAATCCACTGGTTAATCTTTGTGTTGGAACGGCCTTGATCAACTTGGCACTGGGTTTCAGACTTAAAAATAAGCATCGGTGTGTTGTACAAGGTTTAGCATTCCTATACAATAATTTGAAGATCTGTAGGAACAGCCAGGAATCTTTATTCAACATAGCTCGGGCATATCATCATGTTGGTCTTGTAACACTGGCATCGATATATTATGAGAAGGTGATTGCTATTAGCGAAAGAGACTATCCGATACCAAAACTTCGAATTGAGAATATTGATGTCATTGAAAATCATAAACCTGGATACTGCAACCTTCGTAGAGAAGCAGCTTACAATCTGCATTTAATCTACAAAAGGAGTGGGGCTCCTGATCTTGCTAGGCAAGTTCTGAAAGATTATTGTTCCGTTTGA 1302 0.3733 MDYGHYNSALNYFKMFEGNSKKENGLLYLKIAKCYQSLGERKQAIIYFYKALETLQEDVEARISLASLLVEEEKENEAISLLSPPKDSDSGEAHSEKSNRWWVDVRIKLKLCNIFQIRGMLNDFVDVSFPLVHESLRIATPRQQKPNPESPLCNLHKDEEYQLIIDLCNALASLQRYKEALEIINLTPRTSLSAEKNEKLQSLGTQMAYNTTDPKQGFYCVKSNVRQHAQSVAAWNSYYKVISRLENRDTGHVKFVHNMQVNSVDCVPPILISAHQFTRFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLKNKHRCVVQGLAFLYNNLKICRNSQESLFNIARAYHHVGLVTLASIYYEKVIAISERDYPIPKLRIENIDVIENHKPGYCNLRREAAYNLHLIYKRSGAPDLARQVLKDYCSV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02671 433 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 1 143 IPR039340 GO:0006383
Tsu02g02671 433 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 154 433 IPR039340 GO:0006383
Tsu02g02671 433 SUPERFAMILY TPR-like 164 427 IPR011990 GO:0005515
Tsu02g02671 433 SMART tpr_5 25 58 IPR019734 GO:0005515
Tsu02g02671 433 SMART tpr_5 345 378 IPR019734 GO:0005515
Tsu02g02671 433 SUPERFAMILY TPR-like 4 82 IPR011990 GO:0005515
Tsu02g02671 433 Gene3D Tetratricopeptide repeat domain 136 432 IPR011990 GO:0005515
Tsu02g02671 433 Pfam Tetratricopeptide repeat 28 53 IPR019734 GO:0005515
Tsu02g02671 433 Pfam Tetratricopeptide repeat 346 376 IPR019734 GO:0005515
Tsu02g02671 433 ProSiteProfiles TPR repeat profile. 25 58 IPR019734 GO:0005515
Tsu02g02671 433 Gene3D Tetratricopeptide repeat domain 1 111 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02671 Tsu-Chr2 27999411 28005291 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02671 K15201 - gmx:100813793 464.922