Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02643 ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTATGCAACTTGCCCTATGGGACCGACGATAATATGTTGGCTGAATATTTTGGCACCATTGGAGTAATAAAGAAAGATAAGCGTACAGGGAGACCTAAAATATGGTTATACCGAGACAAAGAGACTAATGAACCAAAGGGAGACGCTACTGTAACGTATGAAGATCCACATGCTGCCGTGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCGGAGTCAAAAAACAAGGATGACCAAACATATAATTCAATAGCAGATCCGGGTATTGCTGGTAATGTTGTTGCACCAGAGGAAACTGAAACTGAGAGTGATGGTAATGGTGTTAATGGAAGAGGAAGAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCCAATGTGAATTTTGCTTTTCGTGGTGCGTGTAACCGCTGTGGAAGTGCACGTCCTGCTGGTGCTTCCGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGTCGTTCTGGGCAAGATTCAGGGGGTATTGGCCGTCCAGCTGGTCCAACTGCAGGACTATTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACCAATAAGCCTGGGCACAATGAGGGTGGTGTGAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAGGCTGAAGATGATGGTGAGTTGTATGATGAATTTGGAAACCTTAAGAAGAAGTTCCGTGCCAAAACACAGCAATCTGAAGCTGCACGGGTGCTTCCTGGTTCAGGGCGTGCTGGATGGGAGGTTGAGGATTTAGGGATTGACAGAGATGCTACAGAAAAAAGCAGAGACAGAGGAAGGGACCGCGATGATGGAGATCGCAGAAGCAGAGAGCAACACGAGGAGAGGCAAAGCGGTCGAAATAGAGAGAGGGACAGGGGAAGAGACCGAGACAGGGATTATGGGAGAGATCGGGACCGAAGTAGACACCGATATTAA 1146 0.4703 MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVFIAESKNKDDQTYNSIADPGIAGNVVAPEETETESDGNGVNGRGRGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDSGGIGRPAGPTAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSEAARVLPGSGRAGWEVEDLGIDRDATEKSRDRGRDRDDGDRRSREQHEERQSGRNRERDRGRDRDRDYGRDRDRSRHRY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02643 381 ProSiteProfiles Zinc finger RanBP2 type profile. 217 246 IPR001876 -
Tsu02g02643 381 Pfam Zn-finger in Ran binding protein and others 220 246 IPR001876 -
Tsu02g02643 381 Pfam Zn-finger in Ran binding protein and others 152 181 IPR001876 -
Tsu02g02643 381 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 378 - -
Tsu02g02643 381 SUPERFAMILY Ran binding protein zinc finger-like 146 183 IPR036443 -
Tsu02g02643 381 CDD RRM_SARFH 15 97 - -
Tsu02g02643 381 ProSiteProfiles Zinc finger RanBP2 type profile. 151 182 IPR001876 -
Tsu02g02643 381 SUPERFAMILY Ran binding protein zinc finger-like 212 247 IPR036443 -
Tsu02g02643 381 MobiDBLite consensus disorder prediction 318 381 - -
Tsu02g02643 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Tsu02g02643 381 SMART rrm1_1 14 95 IPR000504 GO:0003723
Tsu02g02643 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Tsu02g02643 381 MobiDBLite consensus disorder prediction 184 213 - -
Tsu02g02643 381 MobiDBLite consensus disorder prediction 258 281 - -
Tsu02g02643 381 Gene3D - 12 95 IPR012677 -
Tsu02g02643 381 MobiDBLite consensus disorder prediction 246 281 - -
Tsu02g02643 381 Coils Coil 261 281 - -
Tsu02g02643 381 ProSitePatterns Zinc finger RanBP2-type signature. 221 240 IPR001876 -
Tsu02g02643 381 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 378 - -
Tsu02g02643 381 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Tsu02g02643 381 SMART zf_4 153 179 IPR001876 -
Tsu02g02643 381 SMART zf_4 219 243 IPR001876 -
Tsu02g02643 381 Gene3D - 216 247 - -
Tsu02g02643 381 Gene3D - 147 184 - -
Tsu02g02643 381 ProSitePatterns Zinc finger RanBP2-type signature. 155 176 IPR001876 -
Tsu02g02643 381 MobiDBLite consensus disorder prediction 296 381 - -
Tsu02g02643 381 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02643 Tsu-Chr2 27609991 27615362 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02643 - - aip:107628735 541.576