Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02617 ATGCCAATGCCATCTTCATTCCGAACTCACAACTTCAACCGCTTCAAACCAACCGATCTATGCATCGTCAAACCCATCATCTCTTCCAAAACTCATCTCTCTCAAGCCGTTTCTTCTCTTGATCTTTTGCACCCCAGAGGTATTCGTTTACCTTCCCACGTTCTCGTTAATCTCTTGCGTCGTTGCTCTGAAACTAAGTCTTATAAAGAGGGTAAGCTTGTTCATCTTCATTTGAAGCTTACTGGTTTTAAACGACCCAACACGCTTATTGCTAATCATTTGATTCATATGTATTTTTGCTGTGGTGATTATGTTTGTGCACGTAAGGTGTTTGATAAAATGGAGGTTAGAAATTTGTATTCTTGGAATAATATGCTTTCTGGGTATGTTAAATTAGGGATGTTGAAACAAGCTAGGAGCATGTTTTATCAAATGCCGCAAAAGGATTATGTGTCGTGGAATACGATGGTGGTTGGTTATGCACATTGTGGGAGGTTTAGTGAGGCTTTCAGGTTTTATGGACAGTTGAGGAGATTGTGTATTGGATATAATGAGTTTACGTTTGCTAGTGTATTGATTGTTTGTGTGAAATTGAAAGAATTTGAACTTTGTAGGCAGATTCATGGACAGGTTTTAGTTGTTGGGTTTTTATCCAATGTGGTTGTTTCCAGCTCAATTGTAGATGCTTATGCAAAATGTGGTAGAATGGAAGATGCAAGGAGATTGTTTGATGATATGCCCGTGAGAGATATTCCTGCTTGGACGACGTTAGTTTCAGGATATGCTTTATGCGGGGATATGGAATCAGCTGCTGAACTGTTTAGTCGGATGCCCAAGAAAAATACCTATTCTTGGACGTCTTTGATCGGAGGTTATGCGAGAAATGGTCTGGGTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATTAAGCATCAAGTTAAGCCTGATGAATTCACATTCAGTAGTTGCCTGTTTGCTTGTGCTACTATCGCTTCACTGAAGTATGGTAAGCAGATGCATGCATTTTTGGTGCGGAATAACATCAGAACTAATCCTGTTGTTGTTAGTGCTATTGTTGACATGTATGCAAAATGTGGAAGCATCGAGACTGCCAGGCAAGTCTTTAACTTGGTCAGAAATATGCAAGATGTAGTGTTGTGGAACACTATGATATCAGCGCTGGCTCACTATGGCTATGGTAAAGAAGCCGTTATGATGCTCAACGATATGCTGAAATCAGGAGTGAAGCCAAACAGGACCACTTTTGTTGCCATTCTGAAAGCTTGTAGTCATTCAGGCCTTGTTCACGAAGGACTTCAGTTTTTCAATTCCATGAATGCTGTGCACAGCATTGTCCCAGACCTAGAACACTACGCAAGCCTAATTGATCTTTTGGATCAAGCTGGATGTATTGATGAATCAATGAAGGATACTGTAAACCATGTTTGGTATTCTTTGCTAGGTGTTCTGAATGGAAGTACAGGACTCGAAAGAGAAGTAACTGAATTCCTTATTAAATGGCAGCCTCAATCTTCTGCTGCTTATGTATTACTATCCAGTACATATGCAGCACTCGTGAAATGGGGATTGGTTGAGGAAGTAAGACATATTATGGATGAGAGATGCGTGACGAAAAATCAGTCCATTAGTTGGATCGAAATTGAAAATGAGGTCCATTCTTTCACTTTATCAGATGGATTGCACCCtatgaagaaaataatataCTCAGCTTTGGGGCACTTAAATAACCAGATAGAGGACAATGCCCCATACCTAACTGAAGGatag 1788 0.3982 MPMPSSFRTHNFNRFKPTDLCIVKPIISSKTHLSQAVSSLDLLHPRGIRLPSHVLVNLLRRCSETKSYKEGKLVHLHLKLTGFKRPNTLIANHLIHMYFCCGDYVCARKVFDKMEVRNLYSWNNMLSGYVKLGMLKQARSMFYQMPQKDYVSWNTMVVGYAHCGRFSEAFRFYGQLRRLCIGYNEFTFASVLIVCVKLKEFELCRQIHGQVLVVGFLSNVVVSSSIVDAYAKCGRMEDARRLFDDMPVRDIPAWTTLVSGYALCGDMESAAELFSRMPKKNTYSWTSLIGGYARNGLGHKALGVFRKMIKHQVKPDEFTFSSCLFACATIASLKYGKQMHAFLVRNNIRTNPVVVSAIVDMYAKCGSIETARQVFNLVRNMQDVVLWNTMISALAHYGYGKEAVMMLNDMLKSGVKPNRTTFVAILKACSHSGLVHEGLQFFNSMNAVHSIVPDLEHYASLIDLLDQAGCIDESMKDTVNHVWYSLLGVLNGSTGLEREVTEFLIKWQPQSSAAYVLLSSTYAALVKWGLVEEVRHIMDERCVTKNQSISWIEIENEVHSFTLSDGLHPMKKIIYSALGHLNNQIEDNAPYLTEG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02617 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 278 - -
Tsu02g02617 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 148 564 - -
Tsu02g02617 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat family 383 430 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat family 280 328 IPR002885 -
Tsu02g02617 595 Gene3D Tetratricopeptide repeat domain 297 564 IPR011990 GO:0005515
Tsu02g02617 595 Gene3D Tetratricopeptide repeat domain 157 296 IPR011990 GO:0005515
Tsu02g02617 595 Gene3D Tetratricopeptide repeat domain 28 148 IPR011990 GO:0005515
Tsu02g02617 595 Pfam PPR repeat 151 179 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat 224 250 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat 120 148 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat 354 378 IPR002885 -
Tsu02g02617 595 Pfam PPR repeat 92 118 IPR002885 -
Tsu02g02617 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Tsu02g02617 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Tsu02g02617 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 253 280 IPR002885 -
Tsu02g02617 595 TIGRFAM PPR: pentatricopeptide repeat domain 120 149 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02617 Tsu-Chr2 27311365 27313384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02617 133 586 Glycoside Hydrolase AT3G49170 31.838 7.83e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02617 - - lja:Lj3g3v3500060.1 870.152