Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02580 ATGGGTTTCTTCAGTAccatttttggattttttggatTTGGACTTGGAATTTCAATTGGTCTCATTCTTGGTTATTTTCTCTTCATCTACTTTCAACCTACAGATGTTAAGGATCCTAAAATTACGCCACTGGTGGATCAAGATGATGAGACTTTGCAGAAAATGCTTCCTGAGATTCCAAATTGGATTAAAAATCCAGACTTTGATAGGcttgATTGGCTGAACAAGTTTATAGAACTTATGTGGCCTTATCTTGAAAAGGCAATATGCAAGACTGCGAAAAACATTGCGAAACCCATAATTGAAGAGCAgattccaaaatataaaattgattctgTTGAGTTTCAAACACTCACTCTTGGGTCCCTGCCACCAACTTTTCAAGGCATGAAAGTTTATTTGACGGATGAGAAGGAGTTGATTATGGAGCCTTCTATAAAATGGGCTGCAAATCCTAATGTCACCATTGCTGTTAAGGCATTTGGGTTGAAAGCAACTGTTCAGGTTGTGGATTTGCAAGTTTTTCTTTTGCCTCGTATTACTTTGAAGCCGTTGGTTCCAAGCTTTCCTTGCTTTGCCAACATCTTTGTTTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCCGGTGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTAGCAAACATGTATCTGTGGCCCAAAACCCTGGAAGTTCCAATATTAGATCTGGCAAAAGCTTTGAGGAGGCCTGTTGGAATTTTACATGTAAAAGTTCTGCAAGCCATGAAGTTAAAGAAGAAAGATCTCCTTGGTGCATCTGATCCTTATGTTAAACTAAAGCTTACTGACGACAAGATGCCATCAAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCTGAGTGGAATGAAGAATTTAATTTGACGGTCAGAGATCCAGAGTCTCAGGTTTTAGAGATCAATGTTTATGACTGGGAGCAAGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCACTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTGGaacttttaaaaactttggATCCCAATGATGCTCAAAATGAGAAATCCCGAGGACAGATTGTTGTGGAATTGACTTATAAACCCTTCAAGGAAGACGAGATGGGCAAAGGCTTTGATGAGACACAGACAATACCTAAAGCTCCTGAAGGCACTCCACCTGGTGGAGGTCTTCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTACGTCTTATTTTCAGAGGGGAAGAGAAAAAGACTAAGCGAATAAAAAAGAACAGGGATCCAAGGTGGGAAGAAGAGTACCAATTTCCAGTAGAGGAGCCTCCCACCAATGATAAACTACATGTAGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAAAAGGAATCATTGGGTTATGTCAACATCAATCTTGGTGATGTTGTTTCTAACAAGAGAATCAATGAGAAGTATCATCTCATAGACTCCAAGAATGGTCGCATCCAGATAGAGTTGCAGTGGAGAACTTTAGAAGCACAGGAATAA 1626 0.3875 MGFFSTIFGFFGFGLGISIGLILGYFLFIYFQPTDVKDPKITPLVDQDDETLQKMLPEIPNWIKNPDFDRLDWLNKFIELMWPYLEKAICKTAKNIAKPIIEEQIPKYKIDSVEFQTLTLGSLPPTFQGMKVYLTDEKELIMEPSIKWAANPNVTIAVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLVGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVPILDLAKALRRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTDDKMPSKKTTVKHKNLNPEWNEEFNLTVRDPESQVLEINVYDWEQVGKHDKMGMNVITLKEVSPEEPKRFTLELLKTLDPNDAQNEKSRGQIVVELTYKPFKEDEMGKGFDETQTIPKAPEGTPPGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEEEYQFPVEEPPTNDKLHVEVVSTSSRNLLHQKESLGYVNINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTLEAQE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02580 541 Gene3D C2 domain 419 537 IPR035892 -
Tsu02g02580 541 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Tsu02g02580 541 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 392 IPR035892 -
Tsu02g02580 541 CDD C2 262 362 - -
Tsu02g02580 541 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Tsu02g02580 541 Pfam C2 domain 419 520 IPR000008 -
Tsu02g02580 541 Pfam C2 domain 260 360 IPR000008 -
Tsu02g02580 541 SMART C2_3c 261 361 IPR000008 -
Tsu02g02580 541 SMART C2_3c 419 517 IPR000008 -
Tsu02g02580 541 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Tsu02g02580 541 Gene3D C2 domain 256 408 IPR035892 -
Tsu02g02580 541 PRINTS C2 domain signature 304 317 IPR000008 -
Tsu02g02580 541 PRINTS C2 domain signature 277 289 IPR000008 -
Tsu02g02580 541 PRINTS C2 domain signature 326 334 IPR000008 -
Tsu02g02580 541 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Tsu02g02580 541 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Tsu02g02580 541 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Tsu02g02580 541 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02580 Tsu-Chr2 26664802 26672004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02580 247 516 Lipid Metabolism Gene Families AT3G61300 27.526 1.95e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02580 - - gmx:100803978 966.066