Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02578 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGccccttcatcttcttcatccagTCCTAAAACTCGTTCAAACAAACGCGCTCGTTTATCTTCTTCTAATTCTCCATCTTCCGCCACCGTAGCAACAACCACCGCCACCGCAACAGCCACCAACACagctacaacaacaacaacatccaCTTCTGTTCGTTCAGCTAACACTCGTTCCCGCGCATCAAGAAATAAGGAAACTTTACCGCCTAAGAATCCGACTCCTATGGACTCCAACAATGAATCAGGCTCTGGCTCAAGACGTGATCGACGTGGTAAGAATTTGGAAAGGGATAATTCCGATAAGGGTAAGGAGAAAGAGCACGATGTTAGGATCAGGGAAAGAGAGGCCGAGAGAGGCTTGACTTTGAACGTGGAAACTGGTGCTGGGGATGAAGATGATAACGATAGTGACAGTGGTATTTTGCGTCAGAATTTAACATCTGCTAGCAGTGCACTCCAAGGTCTTCTTCGTAAACTCGGTGCTGGTTTGGATGATCTGCTACCGTCATCTGGGATGGGTTCCTCGTCTCATCAGAGTGGGAGGTTGAAGAAGATTCTGTTTGGGTTACGAGCTGATGGAGAAGAAGGTCGACAGGTTGAGGCTTTGACTCAGCTTTGTGAAATGCTTTCTATTGGGACTGAGGATTCACTTAGTACTTTCTCTGTTGATTCGTTTGTACCGGTGCTCGTGGGATTGCTGAATCACGAGAGTAATCCTGATATTATGCTTCTTGCTGCAAGGGCGCTAACTCATCTCTGTGATGTGCTCCCTTCGTCTTGTGCTGCTGTTGTGCATTATGGAGCTGTTTCAATCTTCTGCGCGAGATTGCTCACTATAGAGTATATGGACTTGGCTGAACAGTCCCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCATGCCTACGAGCTGGGGCTCTCATGGCCGTACTCTCTTATCTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCATCTGACTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTCCTTCAGTACCATGATTCCAAGgTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCCTCAGACAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGTACGCCAACATATACTGGTTTAATCCGACTTCTTTCAACATGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTCTGCTTCTGCTTGGAATTAGTGGTATTCTTAAAGACATTCTCTCTGGTTCTGGAGTTTCTTCTAATGCCTCAGTTTCTCCTGCATTAAGCAGGCCACCTGATCAGATATTTGAGATTGTGAACCTGGCAAATGAGCTTCTCCCCCCATTGCCACAAGGGACTATTTCCCTCCCTGTCAGCACCAACTTTGTGAAGGGTCCGGTTATAAAAAAGTCTCCTGCTGGCAGTTCTGTGCAACAAGAAGACACAAATGGAGATGTTCCTGAGATATCCGCTCGTGAGAAGCTATTAAATGAACAGTCTGAACTGCTTAGGCAGTTTGGGATGGATCTCCTCCCAGTTTTAATACAGATTTATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTTTCGGTCATTGGAAAGTTGATGTATTTCAGTGCAGCAGAGATGATCCAATCTTTGTTAAGCGTGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGGCATCAAAAGATCCACATGTACTGCTACCTGCCTTGCAAATTGCAGAAATTCTTATGGAAAAGCTGCCCGAGACATTCTCTAAGATGTTTATCAGAGAAGGTGTCGTTCATGCAGTGGACCAACTTATTTTGCCCGGAAGTTCAACCATTGTCTCTTCAGCAGAGAAGGATACTGATTCTATACCTGGAGCATCTTCTCGCCCTAGGCGTAATAGGCGACGCTCTGGCAACTCCAATCCTGATGGAAATTCTTTGGAAGATGTCAAGAGTCCTGTATCAGTAAATGTTGGTTCACCTCCAAGTTCTTCAAATATTCCAACAGTAAATTCTAGTATCCGGTTATCTGTTAGTGCAGCTGCAAAATCTTTTAAAGATCAGTACTTTCCTTCAGATCCTGGGGCTGTTGTGGGTGTTACTGATGATCTTTTGCATCTGAAAAATCTTTGCACGAAGTTAAATGCTGGTGTTGATGACCAAAGAACTAATGGTAAGGGGAAATCCAAAACTTCTGGATTTGGTATGGAGGAGTGTCTAATTGGCATCATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCCACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGCGGGTATTTTGCTAAAGATAAACCCTCAGAAACCCACCTACCTAAGCTTCGCAAACAAGCACTTTCAAGATTCAAGTCATTTATTACTGTTGCACTGCCTGCCACTATTGACAATAAGGATGTAACTCCTATGACTGTCTTGGTTCAAAAGCTTCAAAATGCTTTGTCCTCCATGGAGCGTTTCCCTGTTATGCTGAGTCAAGCACCTAGGTCATCCAGTGGAAGTACACGCCTCGGACTAAGTGCATTATCCCAGCCATTTAAATTGCGTCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTACTCAAACAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGTTCAGAAGTCCACTGCACCTGTTGGGAATTCTGAATCTGGGACAAGTCCTGCAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACCCCGTCCACTACCCGTCGTCATTCTACGAGATCCAGACCATCTGCTGGTTTAGGGGATACCCCCAAAAAAGAGTTATCTCAAGATAAAACCTCAAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGGAAGAGGACCTCAAACCAGGAATGCTGCACGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACTTCTGAGGATGAAGATTTAGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTCatcgaagatgatgatgatatttctgatgatgaagatgatgaccATGAAGACATGCTGAGGGATGACTCCCTTCCTGTTTGCGTACCTGACAAAGTACATGATGTGAAATTGGGTGACACAGCTGAGGAGAGTACTGTTACTCCTGCAACTAATGAAGGACAGACTAATGCAGCTTCTGGTTCTAGTAGCAAAGTTGGTTCGGTAAGGGGATCAGACACTGCAGATTTTAGGGGTGGCTATTCTTCTAGCTCTCGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGTAGAGGAATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAGTGATCCTCCGAAGTTAATATTCACTGCTGGTGGGAAACAACTTAACAGGCAGCTGACTATTTATCAAGCAGTTCAAAGACAGCTTGTGCTGGATGAAGATGACGATGAGAGATTTGCTGGCAGTGACTTTGTGTCTAACGATGGAAGCAGGATGTGGGGTGACATTTTCATAATAAATTATCAGAAGGCAGATAGCCAAACAGATAAGGCTTCCCCAGTCGGCCCAAGTTCTAACACTTCAAAATCGACTAAATCTGGGTCTGTATCAAATTGCAGTTCTGATGTCAAACTGCATCAGTCATCTGTAGTAGATAGTATCTTACATGGAGAATTGCCTTGTGAGCTGGAGAAATCTAATCCAACATACGACATATTGGCTCTGTTACGTGTGCTGGAGGGTTTGAACCAGCTCGCACCTCGTTTGAGGGCCCAAGTGGCTACCGATAGTTTTGCTGAGGGAAAATTTTTGGATCTAGATGAGCTAGTTGTTGCCACAGGTTCTAAGGTTCCTCCAGAGGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAGATACAAGATGCTCTTGCCCTATGCAGTGGGAGTCTTCCCTCATGGTGTTATCAGTTAACTAAAGCGTGCCCTTTTTTGTTTCCATTTGAGATTCGAAGACAATACTTCTATTCAACTGCCTTCGGGTTATCTCGTGCATTGTATCGACTCCAACAGCAGCAGGGTGCCGATGGTAATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGAAGACTGCAGCGCCAAAAGGTCCGTGTCTCTCGAAACCGCATTTTGGATTCCGCTGCTAAAGTGATGGAAATGTATTCCAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCGACCCTTGAGTTCTATACACTTCTAAGTCACGACTTACAAAAAGTTGGACTTCAGATGTGGAGATCAGGTTCTGATCAAATGGAAATTGAtggagatgaaaagaaaaagaaaagcagTGAAGGCAATATTGCTAGAGATGGGGAACTTGTTCAAGCTCCTCTTGGTTTGTTTCCTCGTCCCTGGCCTGCAAATGCTGATGCATCTGACGGAAGCCAGCTTTTTAAAGTGATTGAATATTTCCGGCTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAAGATGGACGTCTATTAGATTTGCCATTATCTGTAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGCATGACATTCTTTACATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTATGCCGGAAACATAATATAGAGTCTATTGGTGGTGGTTATTCCGGTGCAGTAGCCAATTTGCATTACCGTGGAGCTCCAATTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCAGATTACACCTTGAAATCTGGGGATGAAATTGTTGACCTCAATAATCTAGAGGATTATATATCCATGGTTGTTGATGCCACTGTCAAGACTGGAATAACGCGCCAACTAGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATATTTACGCCTCACGAACTGGATTATTTGCTTTGTGGCCGTAGAGAATTGTGGAAGACGGAGACATTAGCTGATCATATAAAATTTGACCATGGGTATACTGCCAAAAGCCCCGCAATAGTGAATTTACTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCCCCTGGTGGACTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGAAAGCTCTCGTCAACTGCTGCTCATACTACATCCAATGGGAATGGACCTTCAGAAACGGCAGATGATGACTTGCCAAGTGTGATGACATGTGCAAATTACTTGAAGCTTCCTCCTTATTCTACAAAGGAAATTATGTACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGACTTATCATGA 5676 0.4341 METRSRKRAEASSAAPSSSSSSPKTRSNKRARLSSSNSPSSATVATTTATATATNTATTTTTSTSVRSANTRSRASRNKETLPPKNPTPMDSNNESGSGSRRDRRGKNLERDNSDKGKEKEHDVRIREREAERGLTLNVETGAGDEDDNDSDSGILRQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPDQIFEIVNLANELLPPLPQGTISLPVSTNFVKGPVIKKSPAGSSVQQEDTNGDVPEISAREKLLNEQSELLRQFGMDLLPVLIQIYGSSVNIPVRHKCLSVIGKLMYFSAAEMIQSLLSVTNISSFLAGVLASKDPHVLLPALQIAEILMEKLPETFSKMFIREGVVHAVDQLILPGSSTIVSSAEKDTDSIPGASSRPRRNRRRSGNSNPDGNSLEDVKSPVSVNVGSPPSSSNIPTVNSSIRLSVSAAAKSFKDQYFPSDPGAVVGVTDDLLHLKNLCTKLNAGVDDQRTNGKGKSKTSGFGMEECLIGIISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFAKDKPSETHLPKLRKQALSRFKSFITVALPATIDNKDVTPMTVLVQKLQNALSSMERFPVMLSQAPRSSSGSTRLGLSALSQPFKLRLCRAQGEKSLKDYSNNVVLIDPLASLAAIEEFLWPRIQRSESVQKSTAPVGNSESGTSPAGAGVPPPSTSTPSTTRRHSTRSRPSAGLGDTPKKELSQDKTSSSSKGKGKAVLKPAQEEGRGPQTRNAARRRAALDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDDISDDEDDDHEDMLRDDSLPVCVPDKVHDVKLGDTAEESTVTPATNEGQTNAASGSSSKVGSVRGSDTADFRGGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSSDPPKLIFTAGGKQLNRQLTIYQAVQRQLVLDEDDDERFAGSDFVSNDGSRMWGDIFIINYQKADSQTDKASPVGPSSNTSKSTKSGSVSNCSSDVKLHQSSVVDSILHGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDSFAEGKFLDLDELVVATGSKVPPEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEIRRQYFYSTAFGLSRALYRLQQQQGADGNGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMEIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANADASDGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYIDAELGKTLQELNALVCRKHNIESIGGGYSGAVANLHYRGAPIADLCLDFTLPGYPDYTLKSGDEIVDLNNLEDYISMVVDATVKTGITRQLEAFRAGFNQVFDISSLQIFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAAHTTSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02578 1891 Gene3D - 547 674 IPR011989 -
Tsu02g02578 1891 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 75 1891 - -
Tsu02g02578 1891 SUPERFAMILY ARM repeat 197 664 IPR016024 -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1133 1159 - -
Tsu02g02578 1891 SMART hect_3 1484 1891 IPR000569 GO:0004842
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1 156 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1191 1214 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1125 1161 - -
Tsu02g02578 1891 Gene3D Hect, E3 ligase catalytic domain 1763 1889 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 964 1009 - -
Tsu02g02578 1891 Gene3D - 187 504 IPR011989 -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 10 96 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 964 1112 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1278 1304 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 695 726 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1047 1061 - -
Tsu02g02578 1891 Gene3D Hect, E3 ligase catalytic domains 1414 1653 - -
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 1073 1108 - -
Tsu02g02578 1891 CDD HECTc 1473 1886 IPR000569 GO:0004842
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 671 726 - -
Tsu02g02578 1891 SMART arm_5 311 351 IPR000225 GO:0005515
Tsu02g02578 1891 SMART arm_5 354 392 IPR000225 GO:0005515
Tsu02g02578 1891 SMART arm_5 228 269 IPR000225 GO:0005515
Tsu02g02578 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 75 1891 IPR045322 GO:0006511|GO:0061630
Tsu02g02578 1891 MobiDBLite consensus disorder prediction 97 135 - -
Tsu02g02578 1891 SUPERFAMILY Hect, E3 ligase catalytic domain 1465 1884 IPR035983 GO:0004842
Tsu02g02578 1891 Pfam HECT-domain (ubiquitin-transferase) 1521 1891 IPR000569 GO:0004842
Tsu02g02578 1891 ProSiteProfiles HECT domain profile. 1591 1891 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02578 Tsu-Chr2 26592240 26602847 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02578 K10590 - gmx:100783336 2932.9