Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02571 ATGGCGGAAGAATACGAAACCGATAACGAAGCTGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAGAAACACTCCTCTTTTATACGATCTCTTCATCTCTCATCCTCTCGCATGGCCTTCTCTCACCGTTCAATGGCTTCCTTCTCCTCCTCAACCCCATCCTCACCCTTCCTTTAACCTCCACAAACTCCTCCTCGCCACTCACACTTCCGATGAAGAACCTAATTACCTCATGCTCGCTGAATCATCACTCCCATTTAACACATCTCAACCCATTGTCGTTGATGATCCTGAAAACCCTATTCTTCCTAAggtGGAGATTACGCAAAGGGTTCTTGTTGATGGGGAGGTGAATAGGGCTCGTTCTATGCCACAGAATGCTAGTATTGTTGCTGCCAAGACTTGTAACTCTGAGGTTTATGTGTTTGATTTTACGAAGGAGCGTGGAGATGGTTGTGATCCTGATTTCAGGTTGAGGGGTCATGATAAAGAAGGTTATGGGCTGTCTTGGAGCACTTTTAAGAATGGGTATCTTTTGAGTGGTTCTAATGATAATAAGATTTGCTTGTGGGATGTGTTTGGTGGATCTGAAAATAAGGTGCTTGATGCTGTTCATGTTTATGAGGGCCATGAAAGTAATGTTGAAGATGTGTCTTGGCATCTGAATAATGAGAATTTATTTGGGTCTGGTGGAGATGACTGCAAATTGATAATCTGGGACTTGCGGACAAACAAAGCCCAACATTCACTCAAACCCCATGAAAGGGAGGTGaactttgtttctttcaatCCGTATAACGAATGGATTTTGGCTACAGCATCTTCAGACACCACCATTGGTCTTTTTGATATACGGAAGCTTGAGGCGCCACTGCATTTTTTAAGTAGCCACACAGATGAGGTATTCCAGGTAGAATGGGATCCTAACCATGAAGGAATATTGGCATCATCTAGTGCTGACAGAAGGCTGATGGTTTGGGACCTTAACAGGATTGGGGATGAGGTGATCGAGGGAGATGATGAGGGTCCTCCTGAACTACTCTTCTCTCATGGGGGTCACAAAGGAAAAATATCAGATTTTTCATGGAACCAAAACCATCCATGGGTAATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGAAAATGGCAGAAAGCATTTACAATGATGGTGATGACGATGATATTTGGATGGGCAATGACCAACACTAA 1215 0.4305 MAEEYETDNEAEVEEEFSVWKRNTPLLYDLFISHPLAWPSLTVQWLPSPPQPHPHPSFNLHKLLLATHTSDEEPNYLMLAESSLPFNTSQPIVVDDPENPILPKVEITQRVLVDGEVNRARSMPQNASIVAAKTCNSEVYVFDFTKERGDGCDPDFRLRGHDKEGYGLSWSTFKNGYLLSGSNDNKICLWDVFGGSENKVLDAVHVYEGHESNVEDVSWHLNNENLFGSGGDDCKLIIWDLRTNKAQHSLKPHEREVNFVSFNPYNEWILATASSDTTIGLFDIRKLEAPLHFLSSHTDEVFQVEWDPNHEGILASSSADRRLMVWDLNRIGDEVIEGDDEGPPELLFSHGGHKGKISDFSWNQNHPWVISSVAEDNSFHVWKMAESIYNDGDDDDIWMGNDQH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02571 404 Pfam WD domain, G-beta repeat 204 240 IPR001680 GO:0005515
Tsu02g02571 404 Pfam WD domain, G-beta repeat 347 383 IPR001680 GO:0005515
Tsu02g02571 404 Pfam WD domain, G-beta repeat 246 283 IPR001680 GO:0005515
Tsu02g02571 404 Pfam WD domain, G-beta repeat 289 327 IPR001680 GO:0005515
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 200 IPR001680 GO:0005515
Tsu02g02571 404 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 396 - -
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 249 IPR001680 GO:0005515
Tsu02g02571 404 Gene3D - 1 397 IPR015943 GO:0005515
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 329 - -
Tsu02g02571 404 ProSitePatterns Trp-Asp (WD) repeats signature. 178 192 IPR019775 -
Tsu02g02571 404 SMART WD40_4 243 283 IPR001680 GO:0005515
Tsu02g02571 404 SMART WD40_4 343 383 IPR001680 GO:0005515
Tsu02g02571 404 SMART WD40_4 151 191 IPR001680 GO:0005515
Tsu02g02571 404 SMART WD40_4 200 240 IPR001680 GO:0005515
Tsu02g02571 404 SMART WD40_4 287 327 IPR001680 GO:0005515
Tsu02g02571 404 PANTHER WD40 REPEAT FAMILY 1 396 - -
Tsu02g02571 404 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Tsu02g02571 404 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Tsu02g02571 404 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 329 IPR001680 GO:0005515
Tsu02g02571 404 SUPERFAMILY WD40 repeat-like 117 384 IPR036322 GO:0005515
Tsu02g02571 404 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 15 85 IPR022052 -
Tsu02g02571 404 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 245 - -
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 192 - -
Tsu02g02571 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 285 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02571 Tsu-Chr2 26474486 26476877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02571 207 385 Miscellaneous Gene Families AT5G08390 22.905 1.24e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02571 K10752 - gmx:100791834 676.396