Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02565 ATGGAACTTAACAAATTCTGTTTCAACTACCATAACCGTTCTCTCCGATTAACTTctcctctttctctttctccTCCTCGCACTCACTTCCTCGGTTCCAATCACACTCTTCTTAAACAACCACCTACTACTTCACCTTCACTTCGGTTTCGTAATAAACGTAGCAATAAGTTAGGGTTTCTTCGTCTTCATTCTCCGCGGTTTGTGTTCAAAGCTTCTTTAGCTTCTCACTCGCTTATAgtcgttgttgttgttgttacttTATCTGCTGTTTCTTTCCTTCATTTCACTCTCaataacaagaaaaagaagaatctCAATCAGGGACATGCAAAATTTGCATTATCACCACAAGGAAGTAATGCTGGGAACCAGGTTATTGATAGACAGATTCTTGGTTTTCCAGAATTTCAAAGGGATAACTCACTGACCGAAATTGGGAAGTTAAATGGTCACATCGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGCCCCCCTTCAGTTTTTACAATCTTCTATGGTGCAGGAAACAGCCTTAAAGACCCAGACATTAGATTCATCTTCGTCTGTTCTTGACTCTGGTGTCAATGGTAACAGTTCCGAGGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTCCATCCAAGTTCATTGGAACCTATAGCTTTTGCTGAAGAAATGACtttacaagttgaagaaaatcAAGACGTTGCTGACTCTGATCTTGAGTTGCCTTTGAGTATGGTCAAACCTGAACATAATGTTTCCTCTGTTGGTTTAGACAATGCGCTTGATACAATCTATGAACATACTAAAGAAAACATTGACCTTCGAGCCATCAAAAGTGATGTCCTTTTTGGTGAATCTGTTAGGGATGGGCTGTACATGTTTTATGAGGACAATAATTCTGCATCCGGATCCATGACACCCTTGAGTAGTATCAAGTCATTTTCTCCCCGAGCTTCTTCTGTGAATAGCACAGGACTGTCATCAGCTATAAGAAATATCAGCCTAAATGGATTAGGATTATCTGCCGAAATTTCTCTTCAAAATGCAGAGTACGTTGAAGAAGCAGTTGAAATTTCCAGTCACAAAGAAGGCTACCCTCCACAACATAGTAAAAACTTGAGGAAATCCAGCAGATATCCGAGAGACAGGGAAAGGAACTATACGGATCGTAATAGTAACAATGTTATGCCCCAGAGTTCCGACATCAGCATGCATATCGATCAGCGAAATGATCGAACCAGGGTCCACGATAGTCAGGAAATTGGTCCTTCAGAACATCTAAGAAAATATAATAGCTTATTAAAAGTTGGGAGGTTACGTGAATGCGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAACGCTGAGTACATTTAATATGCTTATGGCAGTGTGTGCGTGCTCCGAAGATTCAGAAGGGGCTTTCGAAGTTATGCAGCTTCTTAAGGATGCTCAACTAGATCCTGATTGCAAACTTTATACCACTCTGATATCAACTTGTGGCAAGAGTGGGAAAGTTGATCTAATGTTCGAAGTTTTTCACACGATGGTTAATTTTGGAGTGGAACCTAACGTTCATACCTACGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAATGTGAAGGCAGATCGTGTTGTTTTCAATGCGCTTATAGCTGCATGTGCACAGTCAGGAGCAATGGCTCGTGCCTTTGATGTGATAGGAGAGATGGAAGCTGAAATACAGCCTATTGAGCCAGATCATGTAACTGTTGGTACATTGATGAAAGCATGTGCAAGGGCTGGTCAGGTTGAACGAGCACGTGAAGTGTATAAGatgatacaaaaatataatataaaaggaTCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACCGGAGATTGGGAATTTGCACGTAGTGTATACGATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTCTGAGTGCACTAATAGATGTTGCTGGGCATGCTAAAAAGCTGGAGGCTGCCTTTGATATACTACAAGAAGCCCGGAAAGAAGGAATACAGATTGGAATAATGACATATAGCTCATTGATGGGTGCCTGTAGCAAGGCAAAGAATTGGCAGAAAGCATTGGAGCTATACGAATATCTTAAATCTCTTAAATTGGTGCGAACAGTTTCAACTGTTAATGCTTTGCTCACTGCACTttGTGAAGGGGATCAATTTCAGAAGGCTTTTGAGGTTTTATCTGAAATGAACGGATTAGGATTGCGCCCAAACAGTATCACATTCTCAATACTTATTGTGGCAAGTGAGAAGAAGGATGATATGGAAGCAGCTCAAATGCTCCTTTCTCAAGCCAAAAAGGATGGTGCATCCCCTACCCTCATCATGTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAAGCTTGCCTTGCTGGTGAATCTGTTATATCTTTTGACTCAGGACGGCCACAAGTTAATAATGAATGGACGTCACTGGCTTTAATGGTCTATCGTGAAACAATCGGAGCTGGTGAAAAGCCTACAAGTGAAATATTGTCACAAATTCTGGGATGCTTGAAATTCCCGTATGACACATATGTGAAAAATAAACTTGTTGAGAACCTGGGAGTAAGTGTTGAAAGCTCAAGAATGGGAAACCTCTGTTCATTGATAGATGGATTTGGCGAATATGATCCTCGTGTTTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCTGTATCATTTAAAATGAATCCTATTGTTATTGATGCTAAAGAATTGGATGCTCTTACTTCTGAGGTGAGCTTGTCTAAAACTTAA 2994 0.3911 MELNKFCFNYHNRSLRLTSPLSLSPPRTHFLGSNHTLLKQPPTTSPSLRFRNKRSNKLGFLRLHSPRFVFKASLASHSLIVVVVVVTLSAVSFLHFTLNNKKKKNLNQGHAKFALSPQGSNAGNQVIDRQILGFPEFQRDNSLTEIGKLNGHIGKDNHVFEDQEAPLQFLQSSMVQETALKTQTLDSSSSVLDSGVNGNSSEVLEEPFLSVAFHPSSLEPIAFAEEMTLQVEENQDVADSDLELPLSMVKPEHNVSSVGLDNALDTIYEHTKENIDLRAIKSDVLFGESVRDGLYMFYEDNNSASGSMTPLSSIKSFSPRASSVNSTGLSSAIRNISLNGLGLSAEISLQNAEYVEEAVEISSHKEGYPPQHSKNLRKSSRYPRDRERNYTDRNSNNVMPQSSDISMHIDQRNDRTRVHDSQEIGPSEHLRKYNSLLKVGRLRECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVKEAFDYVRLIPNPTLSTFNMLMAVCACSEDSEGAFEVMQLLKDAQLDPDCKLYTTLISTCGKSGKVDLMFEVFHTMVNFGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDVIGEMEAEIQPIEPDHVTVGTLMKACARAGQVERAREVYKMIQKYNIKGSSEVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFLSALIDVAGHAKKLEAAFDILQEARKEGIQIGIMTYSSLMGACSKAKNWQKALELYEYLKSLKLVRTVSTVNALLTALCEGDQFQKAFEVLSEMNGLGLRPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGASPTLIMCRCIIGMCLRRFEKACLAGESVISFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSEILSQILGCLKFPYDTYVKNKLVENLGVSVESSRMGNLCSLIDGFGEYDPRVFSILEEAASYGVVPSVSFKMNPIVIDAKELDALTSEVSLSKT 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 774 808 IPR002885 -
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Tsu02g02565 997 MobiDBLite consensus disorder prediction 378 392 - -
Tsu02g02565 997 Pfam Pentatricopeptide repeat domain 797 855 IPR002885 -
Tsu02g02565 997 Gene3D Tetratricopeptide repeat domain 629 700 IPR011990 GO:0005515
Tsu02g02565 997 Pfam PPR repeat 434 457 IPR002885 -
Tsu02g02565 997 Pfam Pentacotripeptide-repeat region of PRORP 642 784 IPR033443 -
Tsu02g02565 997 Pfam Pentacotripeptide-repeat region of PRORP 495 637 IPR033443 -
Tsu02g02565 997 Coils Coil 819 839 - -
Tsu02g02565 997 Gene3D Tetratricopeptide repeat domain 465 628 IPR011990 GO:0005515
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 777 809 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 530 563 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 672 705 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 564 597 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 636 667 IPR002885 -
Tsu02g02565 997 TIGRFAM PPR: pentatricopeptide repeat domain 742 773 IPR002885 -
Tsu02g02565 997 MobiDBLite consensus disorder prediction 361 403 - -
Tsu02g02565 997 Gene3D Tetratricopeptide repeat domain 708 886 IPR011990 GO:0005515
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 627 IPR002885 -
Tsu02g02565 997 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Tsu02g02565 997 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 72 994 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02565 423 858 Glycosyltransferase AT1G05670 24.722 8.18e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02565 - - gmx:100814164 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02565 02 26379570 26388645 Tsu02g02565 02 26379570 26388645 ECH