Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02484 ATGCAACAAGAGTTAGAGCAATGGAAGGAACAAGTTTCTCATCTATGGAATCTGGCAAATGATTATCTTCGCCAAGTTCCTCTAAAGCAACTCCATGCCGCTTTTACTATCGTCCTTATAACAACCCTCCTTCTTTACATACTTCGGGCTTTGAAACGCAACAAATCTAACACCATTGTTTTGACTGGACTTAGTGGCAGTGGTAAAACCGTTCTTTTCTATCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAACCTAATGAAGACACTTTTATTCTTAATGGTGAAAAAACAAAGAAGGGCAAGATAAAACCTGTTCGTATTGTTGATGTTCCTGGGCATTCTCGTCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGTGTAATCTTTGTGGTTGATGCTTTGGACTTCTTACCCAATTGCCGTGCTGCCTCAGAGTATCTATATGATCTATTGACCAAGGGAAGTGTTGTGAGGAAGAAGATTCCTCTGCTTATTCTCTGCAACAAAACAGACAAAGTTACTGCTCACACGAAAGAATTTATCCGCAGACAGCTCGAGAAGGAAATCGACAAATTGCGGTCATCAAGAAGTGCGGTTTCAGAAGCTGATGTTACAAATGAGTTCACTTTGGGAGTACCTGGCGAGCCATTTTCCTTTACTCAATGCTCTAACAAAGTTACAACAGCAGATGCTTCTGGTTTAACTGGGGAGATATCTCAGCTAGAAGAGTTTATCAGAGAATATAAAAACCATCCGTTGAATCATTTTCTGCTACTACAACTGCTTAACTTCGAGCTGATTCagattcaatttcaattcattcTCATGGATGCTATCAGAAAACAAGCTTCGAAGCTTCGAGAACAAGTCGCTCGCCAACAACAGGCTGTGTTGAAACAGTTTGGGGCTGGCGGTTATGGAGGTTCAGATAATATGGTTACAGATGAGAGAGAGCTTCACCTACACCAGAGACTTGAGAAACTTTATATATCAACACGTGCCGGGAAGCATTATCAAAGGGACGTTGTTCGTGGAGTAGAAGGTTATATTGTTACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTGTCGGAAGATAGCAGGAAATATGGTTCGGAAAATACATGTACCAGTGGTGGTACATTGTGCAGGGCTGCACTAAGTTATGCACGAGCCCGTGCTCAGATGGAGAAGGAGCGTGGAAACTTACTCAAAGCTCTTGGTACACAGGTTGCAGAACCCTTAAGGGCAATGGTGGTGGGAGCTCCATTAGAGGATGCTCGGCATCTTGCCCAACGTTATGATAGAATGCGACAAGATGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCGGGCAATTCTGAGAATGCTATGAAATTAGAAGCAGCAGAAGCAAAGCTTCAAGACCTGACGACAAACATGAACATATTGGGGAAGGAAGCAGCTGCAGCATTGGCGGCTGTTGAAGCACAGCAGCAGAGGTTAACCCTTCAACGTCTTATAGCTATGGTTGAAGCGGAACGTTCCTATCACCAAGTAGTCCTACAAATTCTTGATCAACTTGAAGGGGAGATGGTATCAGAAAGACAACGAATTGAAGCCCCTCCTACTCCTAGCGTGGATAACAACATGCCACCACCCCCATCATATGAAGAAGTGAATGGTGTTTATGCTTCTCAGACACATAATGGATCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTCCCATACTCTGCTGTGTCTGATGTGGAGCTGAATCTATCAGTTGGTGATTATATTGTCATTCGAAAGGTAACAAACAACGGATGGGCCGAGGGTGAATGCAAAGGGAGAGCGGGCTGGTTTCCGTTTAGCTACATTGAAAGAAGGGATCGTGTTCTAGCAAGTAAGGTTCAGTTGAGGGTGATGGGCATGGTTGAAAAGTGGGATCCAGCCATCCAGTTTCTACCATGGCTATGTGGAGTCATTGTCTTTAATACTTATCTTAAAGCAGTTGTTCAATTGGCTTAA 2070 0.4314 MQQELEQWKEQVSHLWNLANDYLRQVPLKQLHAAFTIVLITTLLLYILRALKRNKSNTIVLTGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFILNGEKTKKGKIKPVRIVDVPGHSRLRPKLDEYLPQAAGVIFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRSSRSAVSEADVTNEFTLGVPGEPFSFTQCSNKVTTADASGLTGEISQLEEFIREYKNHPLNHFLLLQLLNFELIQIQFQFILMDAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDERELHLHQRLEKLYISTRAGKHYQRDVVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGGTLCRAALSYARARAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVREMPGNSENAMKLEAAEAKLQDLTTNMNILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERSYHQVVLQILDQLEGEMVSERQRIEAPPTPSVDNNMPPPPSYEEVNGVYASQTHNGSTDSMGYFLGEVLFPYSAVSDVELNLSVGDYIVIRKVTNNGWAEGECKGRAGWFPFSYIERRDRVLASKVQLRVMGMVEKWDPAIQFLPWLCGVIVFNTYLKAVVQLA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02484 689 SUPERFAMILY BAR/IMD domain-like 329 542 IPR027267 -
Tsu02g02484 689 CDD SR_beta 57 257 IPR019009 -
Tsu02g02484 689 SMART arf_sub_2 40 234 - -
Tsu02g02484 689 Gene3D SH3 Domains 586 644 - -
Tsu02g02484 689 ProSiteProfiles small GTPase Arf family profile. 50 254 - -
Tsu02g02484 689 ProSiteProfiles Src homology 3 (SH3) domain profile. 586 645 IPR001452 GO:0005515
Tsu02g02484 689 Pfam Signal recognition particle receptor beta subunit 55 235 IPR019009 -
Tsu02g02484 689 Coils Coil 504 524 - -
Tsu02g02484 689 SMART SH3_2 589 644 IPR001452 GO:0005515
Tsu02g02484 689 Gene3D - 51 259 IPR027417 -
Tsu02g02484 689 Coils Coil 191 211 - -
Tsu02g02484 689 SUPERFAMILY SH3-domain 550 644 IPR036028 GO:0005515
Tsu02g02484 689 PANTHER SH3 DOMAIN-CONTAINING 285 652 - -
Tsu02g02484 689 Pfam Variant SH3 domain 593 641 IPR001452 GO:0005515
Tsu02g02484 689 Coils Coil 433 453 - -
Tsu02g02484 689 PANTHER PROTEIN, PUTATIVE-RELATED 285 652 - -
Tsu02g02484 689 Coils Coil 285 305 - -
Tsu02g02484 689 Gene3D Arfaptin homology (AH) domain/BAR domain 329 551 IPR027267 -
Tsu02g02484 689 Coils Coil 470 497 - -
Tsu02g02484 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 206 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02484 Tsu-Chr2 25476732 25487129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02484 6 257 Miscellaneous Gene Families AT5G05670 68.775 6.55e-122 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02484 - - gmx:100777051 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02484 02 25476732 25487129 Tsu02g02484 02 25476732 25487129 ECH