Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02459 ATGCACACCTCTGTCGATGATCTAAGCGAACGAGAGAGAGAAAAGATGTTAACGAAATTTGAGACGAAAAGTAACAGAGTTAAGGGATTGAGTTTCCATAGCAAAAGACCATGGATACTTGCGAGTCTTCACAGTGGTGTGATCCAGCTATGGGATTATCGAATGGGAACGTTAATTGACAGATTTGATGAACATGATGGACCTGTTAGAGGTGTTCATTTTCACAATTCTCAACCGCTTTTTGTATCTGGAGGGGATGATTACAAGATTAAGGTCTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTACATTCGTACTGTGCAATTTCATCATGAGAACCCATGGATTGTGAGTGCTAGTGACGATCAAACCATTCGCATCTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAACCACTATGTTATGTGTGCTTCATTCCATCCTAAGGAGGATATTGTTGTGTCAGCCTCCCTGGATCAGACTGTCCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGACCTCCTTCCGATGATATTTTGCGATTGAGCCAGATGAACACAGATCTTTTTGGTGGCGTTGATGCCGTTGTCAAGTACGTGTTGGAAGGTCATGACCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTTATTGTCTCAGGAGCTGATGACCGTCAAGTGAAACTTTGGAGAATGAATGACACTAAGGCATGGGAGGTGGATACTTTGAGAGGTCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCCAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCAACAAAGAGGACTGGAATTCAAACCTTCCGCAGGGAACATGATCGATTTTGGATTCTCTCAACGCATCCTGAAATGAATCTGTTGGCAGCTGGCCATGACAGTGGCATGATAGTCTTCAAGCTGGAGAGAGAAAGGCCCGCCTTTGCAGTTAGTGCTGATTCCTTGTTCTACACAAAAGATCGCTTTTTGCGGTTCTATGAATTTTCAACACAGAGAGAGACACAAGTGCTTACTATTCGGAGACCTGGTTCTTTAAGCCTGAATCAAAGTCCTAAGACTCTTTCCTATAGTCCTGCTGAAAGTGCAATTCTTCTCTGTTCTGATGTGGATGGTGGATCTTATGAGTTGTACTGCATACCCAAAGATAGCACAATTAAGGACAGTTTTGGTAGGGGTGATATGCAAGAACCAAAGAAAGGTCTTGGAGGATCAGCAGTCTTTGTGGGTAGGAATAAGTTTGCCGTGCTTGAAAAAAGCAGCAACCAAGTTCTATTTAAAAACCTGAAGAATGagcttggaaaaaaaattgtgctcCCGATTGCCACCGATGCTATATTCTATGCTGGGCCAAACAGCTTGCTTTGTAGGTCTGAGGATAGGGTGTTTATATTTGATCATCAGCAGAGGATCGTTGATGGCGATCTTCAGACCCCTTTCATCAAGTATGTAGTCTGGTCTAATGACATGGGAAGTGTTGCTTTACTCAGCAAACACGCAATTATGGAACTGAAAAGAAGGGAGATAAAGGACAATCCAGCACGCCAGCAGGAACTTGCAGCATATTTCACTCACTGCAATCTTCAGACACCTCACTTGAGGCTAGCTTTGTTGAATGCAATGACTGTCTGCTACAAAGCAAAGAACCTTGCCACAGCTGCTAACTTTGCCAGGAGACTACTTGAGACCAATCCCAGCATTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTTGCAGCTGCAGAAAGGAATATGACTGATGCCACAGAGTTGAACTATGATTTCCGAAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGTCTCTTGCCCATACTGTACTTCCCGTTTTGTACCAACCCAGGAGGGGCAGCTATGCACTGTGTGTGAACTTTCGGTGGTGGGTGCAGATGCTTCTGGATTGCTCTGTTCTCCTTCACAGATTCGCTGA 2067 0.4364 MHTSVDDLSEREREKMLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSADSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSLSLNQSPKTLSYSPAESAILLCSDVDGGSYELYCIPKDSTIKDSFGRGDMQEPKKGLGGSAVFVGRNKFAVLEKSSNQVLFKNLKNELGKKIVLPIATDAIFYAGPNSLLCRSEDRVFIFDHQQRIVDGDLQTPFIKYVVWSNDMGSVALLSKHAIMELKRREIKDNPARQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPTQEGQLCTVCELSVVGADASGLLCSPSQIR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02459 688 Pfam Coatomer WD associated region 357 539 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Tsu02g02459 688 CDD WD40 24 332 - -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 136 - -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Tsu02g02459 688 Coils Coil 595 622 - -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 103 IPR001680 GO:0005515
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Tsu02g02459 688 ProSitePatterns Trp-Asp (WD) repeats signature. 165 179 IPR019775 -
Tsu02g02459 688 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Tsu02g02459 688 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Tsu02g02459 688 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 179 - -
Tsu02g02459 688 SMART WD40_4 97 136 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 139 178 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 13 52 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 252 291 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 208 247 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 294 332 IPR001680 GO:0005515
Tsu02g02459 688 SMART WD40_4 55 94 IPR001680 GO:0005515
Tsu02g02459 688 SUPERFAMILY WD40 repeat-like 15 330 IPR036322 GO:0005515
Tsu02g02459 688 Gene3D - 14 334 IPR015943 GO:0005515
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 300 IPR001680 GO:0005515
Tsu02g02459 688 Pfam Coatomer (COPI) alpha subunit C-terminus 533 688 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 179 IPR001680 GO:0005515
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 249 - -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Tsu02g02459 688 PANTHER COATOMER 16 533 - -
Tsu02g02459 688 PANTHER COATOMER 536 649 - -
Tsu02g02459 688 Pfam WD domain, G-beta repeat 256 291 IPR001680 GO:0005515
Tsu02g02459 688 Pfam WD domain, G-beta repeat 99 136 IPR001680 GO:0005515
Tsu02g02459 688 Pfam WD domain, G-beta repeat 213 246 IPR001680 GO:0005515
Tsu02g02459 688 Pfam WD domain, G-beta repeat 141 178 IPR001680 GO:0005515
Tsu02g02459 688 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Tsu02g02459 688 PANTHER COATOMER SUBUNIT ALPHA 16 533 - -
Tsu02g02459 688 PANTHER COATOMER SUBUNIT ALPHA 536 649 - -
Tsu02g02459 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02459 Tsu-Chr2 25073814 25080421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02459 77 334 Miscellaneous Gene Families AT5G08390 25.194 4.09e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02459 K05236 - gmx:100802600 999.579