Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02458 ATGGAAAACCAATCTTCaacaacttcatcatcatcgATGCAGTTTCTCATCCTTGAACAAGTTCAATTCATGAATGTAAACGATGATTCTCTTCTTCAATGGGAACTTGTTGATGTTATTGAcactgaagaagaagaacaacaagTTGAAAAAGAACGAACGgtggttgttgatgatgatggtgattcTTTCATTTGGTCTGTTTCTTCTCAAATCGGTGATCCAATTGAAAGAATAAACCATCGTGTACTTCATCTTGATGCATATGTAGAAGATCACAACCATCACCATAATAGGCAAGTTAACcatgatgttgttgatgatgatgaagaggatgatggtgaagatgatgatgatgatttggatgaTGAGCTTGTTCCATGGAATATAGGGAACAAGTTAGGGAGACAGAGAATGAGGAAATTGGGGAAAAGGGTTTCATCAAAGATGCATAATTCAAAGAGGTCTCCTTATCTTTTTGTGAGTCCTGGTTGTGTTCGTGGCAAACATGGGATGGGACTTAAACACTATCTAACTCGACTACAAGCCACTTACATTGGGCCTTGGATGTTTATCGGTGACTTTAATGCAGTAATTGGAGCACATGAAAAAAGTGGCAAAAGATTACCTCCAAAAATTTCTTGCGAAGATTTTCAGTTATGGACTAATGTGAACCAACTCTCTCATCTCAAGACAATTGGAGTCCATATTGCTTGGGCTAATGGCAGAGCTGTGCATTGTTGTGCCCTCTATAAACACTGTTCGGATCATCACCCTATCCTTGCCAGTCAAGACATTTCTAATTCTTTCCATACTATGCCATTTCGTTTCTTTAAGGTTTGGACATCGCATCCTGATTGTGCTAGAGTGGTCAAGGAGATTTGGTCCAAACCAGTTATTGGGAATCCTATGGTTCGTCTTCAGCTGAAGTTAAAGCGTCTGAAAGCAGCCCTTAAATCTTGCACAAACGAGATTGAGCATCATATTGAGCAATATTTCAAAGGTATTTTCTGCAAAGAGAATAATTGTTCCACAAGTCAGATAATTGGTAATAACATTCCAGCCCTTGTTTCTCATGAGGATAGCGAACTGATATCTAAATGCCTTCACAACAAAATTCCGACTGATGAGAATCTTTTACATGCAGCAAAAATGAAGATACATACAGCTGTTATTACTAGTGCAAAGGCTTCTGATGGCCATACTGTTGGTGCTCATAGGGATACTTTAATTCTTCAAAAGCTTCAGACACCCGCGCGCTTGATGAATGCTCCCAAGATAATTTTGGTCTTTTGGAAAGCACCTACTTTTCTTTGGATGAAAGCAAACACATATGGCTCACCTACAAATAATTTGGCTTTGTGTTGTGGTGTATTCCGTGATCACTTGGCTAATTTTATGGGAGGTTTTGCTTCGCAACTTCAGTTCACATCTGTTTTCCATGCGGAGCTTATGGCAATGATTTTGGTGTTGGAAGTGGCTGCTAGCAAAGGGTGGTCTCATCTTTGGATTGAGAGTGACTCTAAGATTGCTCTAGGGGCGTTTCAGAATCTGTCGATTGTTCCATGGGATTTGCGTAATAGGTGGGGAAATTGTTAG 1599 0.3659 MENQSSTTSSSSMQFLILEQVQFMNVNDDSLLQWELVDVIDTEEEEQQVEKERTVVVDDDGDSFIWSVSSQIGDPIERINHRVLHLDAYVEDHNHHHNRQVNHDVVDDDEEDDGEDDDDDLDDELVPWNIGNKLGRQRMRKLGKRVSSKMHNSKRSPYLFVSPGCVRGKHGMGLKHYLTRLQATYIGPWMFIGDFNAVIGAHEKSGKRLPPKISCEDFQLWTNVNQLSHLKTIGVHIAWANGRAVHCCALYKHCSDHHPILASQDISNSFHTMPFRFFKVWTSHPDCARVVKEIWSKPVIGNPMVRLQLKLKRLKAALKSCTNEIEHHIEQYFKGIFCKENNCSTSQIIGNNIPALVSHEDSELISKCLHNKIPTDENLLHAAKMKIHTAVITSAKASDGHTVGAHRDTLILQKLQTPARLMNAPKIILVFWKAPTFLWMKANTYGSPTNNLALCCGVFRDHLANFMGGFASQLQFTSVFHAELMAMILVLEVAASKGWSHLWIESDSKIALGAFQNLSIVPWDLRNRWGNC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02458 532 Gene3D - 440 531 IPR036397 GO:0003676
Tsu02g02458 532 Coils Coil 304 331 - -
Tsu02g02458 532 MobiDBLite consensus disorder prediction 96 124 - -
Tsu02g02458 532 SUPERFAMILY Ribonuclease H-like 446 517 IPR012337 -
Tsu02g02458 532 CDD RNase_H_like 455 525 IPR044730 -
Tsu02g02458 532 Pfam Reverse transcriptase-like 451 511 IPR002156 GO:0003676|GO:0004523
Tsu02g02458 532 MobiDBLite consensus disorder prediction 106 124 - -
Tsu02g02458 532 PANTHER VID27-LIKE PROTEIN 17 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02458 Tsu-Chr2 25068078 25071384 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02458 - - cam:101491164 208.764