Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02445 ATGTCTGACCCTGATATCCCAGCAAACCTTCATATTGAGCTAACCCCAACAGATAACAATAACTCTAACCCTCACTTATCTGACTCTAACCCTCATTCACATGACCAGACCCTCATCACACCTCCTGATAACCCACAACCTAACAGACCTGCTAGACATAAACATCCACCATCTTATTTGTCTGACTATGTATGCAATACTTCTTCTTCTAATCACACAGCAACATCTCCTTCAGGTAGTCTTTACCCTATTGCACATTTTCATTCTTTTGATCATTTGTCTTCTTCTCAAAGGGCTTTTGCCTTGTCTGTCACACAAAGCATTGAACCTAGAACCTATAAAGAAGCATGTGAACATGTACATTGGATAGAAGCTATGAAAGCTGAGCTAGATGCACTAGCTAAAAATGGTACATGGAGACTTGTTGACTTACCACCCCATGTAAAACCAATTGGAAGCAAATGGGTTTACAAGGTAAAACATAAAGCTGATGGGTCTGTAGAACGTTACAAAGCAAGACTAGTGGCCAAAGGTTATAATCAAGTGGAAGGCCTTGATTTTTTTGATACCTTTTCTCCTGTGGCAAAACTCACAACAGTTAGGGTACTATTGGCTCTTGCTTCCATCAATAAATGGCACTTACATCAGCTGGATGTCAACAATGCCTTCTTGCATGGAGATTTACAAGAAGATGTCTATATGCACATACCAGATGGGGTTACTGCTCTGCCCAATCAAGTATGCAAATTGCAGAAAAGTCTCTATGGGTTGAAACAGGCCAGCAGAAAGTGGTATGAGAAGCTCACCCACCTCTTATTGCAGGAAGGTTACCATCAATCTACCTCAGATTACTCTCTATTTACATTGTCTAAAGGTAATGATTTCACTGCCTTACTTGTCTATGTGGATGATGCTGGTATAACCATATCTCAAAGGAAATATTGCCTTGACCTTCTTGAATCCACTGGGCTCTTAGGATCTAAGCCAGCCAACACTCCTCTTGATCCATCTGTCAAGCTACACCAAAATGGCAGTCCCCTATTTGATGACATTCCTGCATATAGAAGATTGATTGGCAAGCTCCTATATCTTAACACCACTAGACCTGATATAACTTTAGCTACTCAACAGTTGAGCCAATTTCTTAATGCTCCCACTATTATTCATTACAAAACTGCTTGTAGGGTCATCAGGTATCTGAAACATAACCCTGGCAGAGGACTATTGTTTCCAAGACAATCAGATACACAAATTCTGGGTTATGTAGATGCTGACTGGGCTGGTTGTAGTGATTCCAGAAGGTCTACTACTGGGTTCTGCTTCTTCTTAGGCCATTCCCTGATTTCTTGGCGTGCTAAGAAGCAACAAACCATCTCTAGATCCTCATCAGAGGCTGAATACAGAGCCCTTTCTACTGCCACTTGTGAATTGCAGTGGTTACTATATCTCCTACATGACTTAAACACTACAAGCACCAAGCAACCTGTTTTGTATTGTGATTCACAGAGTGCAATACACATAGCTTCCAATCCTGTTTTTCATGAAAGGACAAAACATCTAGAATTAGATTGTCATCTTGTGAGAGAAAAAGTGCACAAGGGTGTTCTAAGGTTGCTACCCATCTCTACACATGAGCAGTTGGCTGACTTCTTGACAAAGGCACTACCACCTCCTAAGTTCAATCATTTTGTTTCCAAGCTTGGAATGATAAACATTTATCATGGTCAAGCTTGTGGGAGGCTGTTGAATAATCAAGTAAATGATATAGAAGAAGATCTAACAGACCACATGGAGGAGGAGCATCAcaagtGTCATAAAATGCTTCTGCTGTTTCAAACGGCCGATGGTGGGTATGCAATTTTCAAAGAACTGGATGATCAGGCATTCGAGTTGAAGGCATTTTCCAAATTAAAGACTATTTCAAAAGCTACACAGGAAACTACTTTGCCGATCAGTAATAGACAAGCTAGAAAGCGTCTGCGCAAGTTTCTACGTGTTCATTGTCATAATGAAACGTTAGGTGTAGCTGATTCAAAGCTTCGGAGTATCATTAAGTATAAATTGAAAATTGACTGTGTTCACAACAATGATGTTATGGAGTTGATGAGAGATCTTAGATATCAAGTGACTGAATTAGTAGTATGTCTAGCTTCTCAAAACATGGCCCCTATGAACTTAGGTTTGTGTCATAGATTATCCATATACCAGAAGAAGTTTAATACTGACAAGGTGGAGGCTATGATCGTCCAAGCGATCGATTTACTTAGTAACAATGATATAAAGCTGAACGAAATTTCCGTGAGGCTTCGTGAACAGTACGGTTGCCATTTTCCAGAACTTTCCAAAATCACAATGGACAACATCCAATATGCAAGGACAGTCAAGATGATGTGTGAATGCATTGATGTTGCAAAGCATCATTTCTCTAAGATTTTGTCAGAGGAAGTTGAGACAGAGCTGAAAGAAGCATCTATTACATCCATGGGAACAGAAATTGGTGAGGTTGAATTGGGAAATATTATCAAGCGTTGTGATGAAGTTTTGGCTCTATCAGAATACAGGGCTACGTTCTATAATGATCTCAAGATTAGGATCAACACCATTATACCGGATTTGATAGCTATGGTTGAGGAGATTGTTGGTGCCCGCCTAATATCACGAAATAGCAAAACAATCACCGAAGTTGCTTCACAACTACCAAATGACGCATCTCAATGTCAAATCCAGACATTAAACATGATTATGATGTTGTTTAAACGTTGA 2763 0.3981 MSDPDIPANLHIELTPTDNNNSNPHLSDSNPHSHDQTLITPPDNPQPNRPARHKHPPSYLSDYVCNTSSSNHTATSPSGSLYPIAHFHSFDHLSSSQRAFALSVTQSIEPRTYKEACEHVHWIEAMKAELDALAKNGTWRLVDLPPHVKPIGSKWVYKVKHKADGSVERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRVLLALASINKWHLHQLDVNNAFLHGDLQEDVYMHIPDGVTALPNQVCKLQKSLYGLKQASRKWYEKLTHLLLQEGYHQSTSDYSLFTLSKGNDFTALLVYVDDAGITISQRKYCLDLLESTGLLGSKPANTPLDPSVKLHQNGSPLFDDIPAYRRLIGKLLYLNTTRPDITLATQQLSQFLNAPTIIHYKTACRVIRYLKHNPGRGLLFPRQSDTQILGYVDADWAGCSDSRRSTTGFCFFLGHSLISWRAKKQQTISRSSSEAEYRALSTATCELQWLLYLLHDLNTTSTKQPVLYCDSQSAIHIASNPVFHERTKHLELDCHLVREKVHKGVLRLLPISTHEQLADFLTKALPPPKFNHFVSKLGMINIYHGQACGRLLNNQVNDIEEDLTDHMEEEHHKCHKMLLLFQTADGGYAIFKELDDQAFELKAFSKLKTISKATQETTLPISNRQARKRLRKFLRVHCHNETLGVADSKLRSIIKYKLKIDCVHNNDVMELMRDLRYQVTELVVCLASQNMAPMNLGLCHRLSIYQKKFNTDKVEAMIVQAIDLLSNNDIKLNEISVRLREQYGCHFPELSKITMDNIQYARTVKMMCECIDVAKHHFSKILSEEVETELKEASITSMGTEIGEVELGNIIKRCDEVLALSEYRATFYNDLKIRINTIIPDLIAMVEEIVGARLISRNSKTITEVASQLPNDASQCQIQTLNMIMMLFKR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02445 920 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 629 890 IPR045056 GO:0030515|GO:0031428|GO:0032040
Tsu02g02445 920 Pfam snoRNA binding domain, fibrillarin 759 887 IPR002687 -
Tsu02g02445 920 SMART NOSIC_2 747 799 IPR012976 -
Tsu02g02445 920 MobiDBLite consensus disorder prediction 13 42 - -
Tsu02g02445 920 CDD RNase_HI_RT_Ty1 420 558 - -
Tsu02g02445 920 Gene3D - 717 872 - -
Tsu02g02445 920 SUPERFAMILY Nop domain 741 887 IPR036070 -
Tsu02g02445 920 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 136 313 IPR013103 -
Tsu02g02445 920 MobiDBLite consensus disorder prediction 61 76 - -
Tsu02g02445 920 PANTHER PROTEIN NOP56, PUTATIVE-RELATED 629 890 - -
Tsu02g02445 920 SUPERFAMILY DNA/RNA polymerases 135 526 IPR043502 -
Tsu02g02445 920 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02445 Tsu-Chr2 24958952 24969873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02445 43 572 Receptor kinase-like Gene Family AT4G23160 43.322 1.67e-156 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02445 - - hbr:110643835 642.114