Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02439 ATGTCCGCCTCCATTGACCGTTTCGCTCTTCCATGTTTTGAGGGTTTTTCTGGTAGTAGTGatgagaaaagagaaagaagatctttgaaaaacaaagcTATCAATGCATCTTCTAAGTTTAAACATTCTCTTAAGAAAAAAAGTGGTAGAACAAGAAAAAGTGATGTGCGTGTTAGTTCCGTTTCAATTGAGGATATTCGTGATGTTGAAGAGCTTCAAGCTGTTGATCAGTTTCGTCAATCGTTGATCATTGATGATTTGCTTCCTCAAAAGCATGATGATTATCATATCATGTTaagATTTCTTAAAGCAAGAAAGTTTGATATTGAAAAAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAATTTGGTGCTAATACAGTTATGGAGGATTTTGAGTTCGATGAATTAGAAGAAGTTGTAAAGTATTATCCACAAGGTAATCATGGTGTTGATAAGGAGGGGAGGCCGGTTTACATTGAAAGGCTTGGAAAAGTGGATCCAAACAAACTTATGCAAGTTACAACTATGGATAGATATGTGAAGTATCATGTACGGGAGTTTGAGAAATTGTTTGCGATAAAGTTTCCAGCTTGTTCAATTGCTTCCAAGAAGCATATAGATTCAAGCACCGCAATTTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACAAAATCTGCCCGCGAACTCATAATGCGATTACAAAAGATTGACGGTGACAATTACCCCGAGACTCTTTGTCAAATGTTTATCATAAATGCTGGCCCTGGGTTTAGGATGCTTTGGAACACTATCAAATCTTTTCTCGATCccaaaacaacttcaaagattCATGTTCTTGGAAACAAGTACCATAGCAAATTGCTTGAAGTAATCGATGCCAGCGAGTTGCCAGAATTCTTGGGAGGTACCTGCACATGTATAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAATAATCCTGAAATTATGAAGATCATTCTCAGTGGGGAAGCAAGGCGGCCAAGGCAGGTCGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAAGCCACGATGCCCAATGGTAAAAGGCAGTGATACATCCACAGCTGAATCGGGGTCTGAAGCTGAAGATTTTGTCTCTCCTTCTCCAAAAACGGTGAAGAATTACTCACACTTGAGGTTGACCCCTGTTCGTGAGGAAGCAAAGATAGTTGGAAAGTCAAGCTATGCGGTTAATGGTAACTTAGCTGGGTATCACGAATACATTCCAATGGTAGACAAAGCTGTTGATGCTGTCTGGAAGAAACAAGCATCACTCCAGAGGTCTTCTAGTACAAAAGGAACCCCTCCCCTTTCTGATACTGTAAAACCACCAGAAGATATTCGAGCTCGGATTTGGGTAGCCCTGACTGTTTTCCTTTTAACCATGTTTACTCTCTTCCGTTCACTTGCATATCGTGTGAGCAAGAAACTTCCTGTTGTATCATCTAAAAATGATCAGAGTACTTTAGAGCTAACTCTTGATACAACAAACAAGGAAGACTATTGTTCTTCTTCACCAACTCCAGCATATACAGAGACACAAGTCTTTTCATCCATCATGAAAAGGTTAGGTGAACTTGAAGAGAAGGTTAACACACTAAAATCTAAGCCATCTGAGCTGCCTAGACAGAAAACAGAATTACTAAATGCTGCTGTCTACCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCAGCTAAAAAGGCTCTCTATGAAGCGTTAATCAGGCAAGAAGAGTTGTTTGCGTACATTAATAATCAAGAGGAAGCTAAGTTACGGAAGAAGTTTTGCTGGTGA 1851 0.3917 MSASIDRFALPCFEGFSGSSDEKRERRSLKNKAINASSKFKHSLKKKSGRTRKSDVRVSSVSIEDIRDVEELQAVDQFRQSLIIDDLLPQKHDDYHIMLRFLKARKFDIEKAKHMWADMLQWRKEFGANTVMEDFEFDELEEVVKYYPQGNHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVREFEKLFAIKFPACSIASKKHIDSSTAILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRMLWNTIKSFLDPKTTSKIHVLGNKYHSKLLEVIDASELPEFLGGTCTCIDQGGCLRSDKGPWNNPEIMKIILSGEARRPRQVVKVLNSEGKVIAYAKPRCPMVKGSDTSTAESGSEAEDFVSPSPKTVKNYSHLRLTPVREEAKIVGKSSYAVNGNLAGYHEYIPMVDKAVDAVWKKQASLQRSSSTKGTPPLSDTVKPPEDIRARIWVALTVFLLTMFTLFRSLAYRVSKKLPVVSSKNDQSTLELTLDTTNKEDYCSSSPTPAYTETQVFSSIMKRLGELEEKVNTLKSKPSELPRQKTELLNAAVYRVDALEAELIAAKKALYEALIRQEELFAYINNQEEAKLRKKFCW 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02439 616 MobiDBLite consensus disorder prediction 367 386 - -
Tsu02g02439 616 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Tsu02g02439 616 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 613 - -
Tsu02g02439 616 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Tsu02g02439 616 Gene3D - 127 337 IPR036865 -
Tsu02g02439 616 SUPERFAMILY CRAL/TRIO domain 138 333 IPR036865 -
Tsu02g02439 616 SMART sec14_4 139 310 IPR001251 -
Tsu02g02439 616 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 16 613 - -
Tsu02g02439 616 SUPERFAMILY CRAL/TRIO N-terminal domain 69 134 IPR036273 -
Tsu02g02439 616 Pfam CRAL/TRIO, N-terminal domain 92 118 IPR011074 -
Tsu02g02439 616 Gene3D - 54 126 - -
Tsu02g02439 616 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Tsu02g02439 616 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Tsu02g02439 616 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Tsu02g02439 616 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Tsu02g02439 616 CDD SEC14 152 308 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02439 Tsu-Chr2 24863625 24868400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02439 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 26.141 3.71e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02439 - - gmx:100785793 956.051