Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02436 ATGCCTAGCGATTCTGTTGTAACCGTCAATGGAAATGGCAATGAGAACTCACGCACGAATCCGCAGAGGACTTACCAAGCAGTAGTAATTGCAACCCGAGACATGGGCATTTCTATGGATGGAAAGTTACCCTGGACATTGCCTACTGATCAAAAGTTTTTTGACGATATCACAACTATAACATCTGATCCCGGGAAGAAGAATGCTGTTGTAATGGGTAGAAAATCATGGGAGGCTATCCCTCCCGAGAACAGGCCTCTCAGTGGTCGTCTTAACATTATTCTAACTCGCTCGGGTACTTTTGATATTGCCACTGCAGAGAATGTTCTTTTATGTGGAAGTGTCTCTTCTGCTATGGAACTGTTGGCTTCTTCTCCTTACTGTCTGTCAATTGAGAAAGTATTTCTTACAGGAGGGGGTGAGATATTTAGAGAGGCTCTTCATGGACCTGGATGTGAAGCCATCCATATTACAGAAATTGAAGCAAGCATTGAGTGTGACACTTTTATGCCTCGGATTGATTTCTCTGTATTTCATCCGTGGTATTCATCTTTCCCTTTGGTGGAAAATGGCCTTCGCTATTCTTTTACCACTTATGTGCGTGTAAGGTGTTCAACAGAAGAATCCCAGGGTCTGAATACTGATCCAATTCTTTATGATAATTCAAAACCTCTAAAGTTTGAGGTTaagagtttttcttttcttcctaaGATTATTTTTGAGAGGCATGAAGAGTACAAGTATCTTAGATTAGTGGAAGAAATCATTTCTGAAGGTACAATTAAGGATGATAGGACGGGGACTGGTACCTTGTCCAAATTTGGTTCCAAGATGAGATTTAATCTGCGTAGAAGCTTTCCACTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGTGCTGCAGGAAAAAGGTATTCATATATGGGACGGCAATGCGTTGAGAGAATACCTTGATAGTATTGGTTTGAAAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGATGTACTAATATGCATGAAGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAATAAGATAAAGCATAATCCTGATGACCGACGTATCATCCTCTCAGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCGCCTTGCCacatgtttgcgcagTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGCTGACATGGGCCTAGGCGTGCCATTTAACATTGCATCTTATGCACTCTTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGACGCACATGTTTACCGCAATCATGTGAAGCCTTTGCAGGAACAGCTCCAAAACCTGCCAAAACCTTTTCCGATTTTGAAGATAAATCCAAAGAAGGATATAGATTCTTTTGCTGCAGCTGATTTCAAGCTCATAGGCTATGAACCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1584 0.4059 MPSDSVVTVNGNGNENSRTNPQRTYQAVVIATRDMGISMDGKLPWTLPTDQKFFDDITTITSDPGKKNAVVMGRKSWEAIPPENRPLSGRLNIILTRSGTFDIATAENVLLCGSVSSAMELLASSPYCLSIEKVFLTGGGEIFREALHGPGCEAIHITEIEASIECDTFMPRIDFSVFHPWYSSFPLVENGLRYSFTTYVRVRCSTEESQGLNTDPILYDNSKPLKFEVKSFSFLPKIIFERHEEYKYLRLVEEIISEGTIKDDRTGTGTLSKFGSKMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNALREYLDSIGLKEREEGDLGPVYGFQWRHFGARCTNMHEDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVKPLQEQLQNLPKPFPILKINPKKDIDSFAAADFKLIGYEPHQKIEMKMAV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02436 527 PANTHER THYMIDYLATE SYNTHASE 1 1 527 IPR045097 GO:0016741
Tsu02g02436 527 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 228 527 IPR036926 -
Tsu02g02436 527 Pfam Dihydrofolate reductase 27 201 IPR001796 GO:0004146|GO:0046654
Tsu02g02436 527 ProSitePatterns Thymidylate synthase active site. 390 418 IPR020940 GO:0004799|GO:0006231
Tsu02g02436 527 PRINTS Thymidylate synthase family signature 423 449 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 PRINTS Thymidylate synthase family signature 405 420 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 PRINTS Thymidylate synthase family signature 461 478 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 PRINTS Thymidylate synthase family signature 379 398 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 CDD DHFR 27 200 IPR001796 GO:0004146|GO:0046654
Tsu02g02436 527 CDD TS_Pyrimidine_HMase 248 481 IPR023451 -
Tsu02g02436 527 PIRSF DHFR-TS 8 527 IPR012262 GO:0004146|GO:0004799|GO:0006730
Tsu02g02436 527 Hamap Thymidylate synthase [thyA]. 245 527 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 Pfam Thymidylate synthase 247 527 IPR023451 -
Tsu02g02436 527 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Tsu02g02436 527 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 527 - -
Tsu02g02436 527 SUPERFAMILY Dihydrofolate reductase-like 25 201 IPR024072 -
Tsu02g02436 527 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 236 527 IPR036926 -
Tsu02g02436 527 TIGRFAM thym_sym: thymidylate synthase 247 527 IPR000398 GO:0004799|GO:0006231
Tsu02g02436 527 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g02436 527 Gene3D Dihydrofolate Reductase, subunit A 7 202 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02436 Tsu-Chr2 24839766 24843960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02436 K13998 - gmx:100786311 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02436 02 24839766 24843960 Tsu02g02436 02 24839766 24843960 ECH