Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02411 ATGAACCCAAACGATATTCATCAACTTTGGCTTCATCTTAAATACAATCTCGTTAGTGTCATTACTTGTTCCGCTTTTCTTGTTTTCGGATCCACCGTTTACATCATGACCCGACCCAGATCCATTTACTTGATCGATTTTTCTTGTTATAAACCACCTTCAAATCTTGCTGTTAAATTCACTAAATTCATTCAACATTCAAGACTCAAAGGTGATTTCGATGAATCTTCATTGGAATTTCAGCGTAAGATTCTAGAACGTTCTGGTCTTGGTGAAGAAACTTATTTACCTGAAGCTATGCATAAGATTCCACCAACACCTTCTATGGCTTCTGCTAGAGAAGAAGCTGAACAGGTTATGTATGGTGCTTTAGATAATCTTTTTGCTAATACAAAAATTAAGCCTAAAGAAATTGGTATACTTGTTGTTAATTGTAGTTTGTTTAATCCTACACCTTCACTTTCAGCTATGATTGTTAACAAGTATAAATTACGCGGTAACATTCGAAGTTTTAATTTGGGTGGTATGGGTTGTAGTGCTGGTGTTATCGCTATTGATCTTGCTAAAGACATGCTTCAAGTTCATAGAAATACATATGCCGTTGTTGTAAGCACTGAGAATATTACTCAGAATTGGTATTTTGGTAATAAGAAATCCATGTTGATACCAAATTGTTTGTTTCGTGTTGGTGGTGCCGCGGTCTTGCTTTCGAACAAAGGATGTGATAAAAGAAGAGCTAAGTATAAGCTTGTTCATGTTGTGAGAACTCATAAAGGTGCTGATGATAAAGCATTTAAGTGTGTTTATCAAGAACAAGACGATGTTGGTAAAACTGGTGTATCTTTGTCTAAAGATCTTATGGCTATTGCTGGTGGTGCTCTTAAAACTAATATAACAACTTTGGGTCCTCTTGTTTTACCTGTTAGTGAACagcttttgttttttactaCTTTGGTTGTTAAGAAGCTGTTTAATGCAAAAGCTAAACCTTATATACCTGATTTTAAGTTAGCTTTTGAGCATTTTTGTATACATGCTGGTGGTAGAGCTGTGATTGATGAACTTGAGAAGAATTTGCAACTTTTGCCTAGTCATGTTGAGGCATCTAGAATGACTTTGCATAGATTTGGGAATACTTCATCAAGTTCAATTTGGTATGAGTTGGCTTATATAGAAGGCAAAGGGAGAATGAGAAAGGGTAATAGAATTTGGCAGATTGCATTTGGGAGTGGTTTTAAGTGTAACAGTGCTGTTTGGCAGGCTATGAAACATGTGAAAGCTTCACCTATGAGTCCATGGGAAGATTGCATTGATAGCACTTCCACTTTGTGCGTTCTACCACACGAAGTGTTTGTTTGTACTATGCTTTTAGGCCATACCAAATGGGGTgtcatgttttttgttttcattcgTTGGTCTAAGCTGGAGGGCTTTATATTTTGGTCAAATTCATTATGA 1458 0.3546 MNPNDIHQLWLHLKYNLVSVITCSAFLVFGSTVYIMTRPRSIYLIDFSCYKPPSNLAVKFTKFIQHSRLKGDFDESSLEFQRKILERSGLGEETYLPEAMHKIPPTPSMASAREEAEQVMYGALDNLFANTKIKPKEIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKGCDKRRAKYKLVHVVRTHKGADDKAFKCVYQEQDDVGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPVSEQLLFFTTLVVKKLFNAKAKPYIPDFKLAFEHFCIHAGGRAVIDELEKNLQLLPSHVEASRMTLHRFGNTSSSSIWYELAYIEGKGRMRKGNRIWQIAFGSGFKCNSAVWQAMKHVKASPMSPWEDCIDSTSTLCVLPHEVFVCTMLLGHTKWGVMFFVFIRWSKLEGFIFWSNSL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02411 485 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tsu02g02411 485 SUPERFAMILY Thiolase-like 251 420 IPR016039 GO:0016746
Tsu02g02411 485 PANTHER 3-KETOACYL-COA SYNTHASE 4 1 439 - -
Tsu02g02411 485 Gene3D - 53 421 IPR016039 GO:0016746
Tsu02g02411 485 PANTHER 3-KETOACYL-COA SYNTHASE 1 439 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tsu02g02411 485 SUPERFAMILY Thiolase-like 28 245 IPR016039 GO:0016746
Tsu02g02411 485 CDD CHS_like 24 419 - -
Tsu02g02411 485 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 340 420 IPR013747 -
Tsu02g02411 485 Pfam FAE1/Type III polyketide synthase-like protein 34 323 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02411 Tsu-Chr2 24590186 24592549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02411 1 438 Miscellaneous Gene Families AT1G19440 84.247 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02411 K15397 - vvi:100853861 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02411 02 24590186 24592549 Tsu02g02411 02 24590186 24592549 ECH