LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02382	ATGGCTCAGCCGCTTGTCAAGAAAGACGATGACCGTGACGACGAAGCTGATTATTCCCCCTTTATGGGAATTGAAAAGGGGGCTGTTCTTCAAGAAGCCAGGGTTTTTAATGATCCACAACTAGATGCTAGGAGATGTTCACAgGTTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAGGTTGAAGCTACAGAAGTTTTCTTTTCTGTTACCAAGCTTTTCCAGTCTCGAGATCTTGGGTTGAGGAGAATGGTCTACCTGATAATAAAGGAGCTTTCCCCCTCTGCTGATGAGgttATTATAGTCACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTTTGTCGCATCACGGATGGAACCCTCCTTACCCAAATTGAGCGGTATTTGAAACAAGCAATTGTAGACAAAAATCCAGTTGTTGCAAGTGCGGCCCTAGTTAGTGGTATTCATCTACTTCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTGCAATCAAGAGCAGCTCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGTCAGAATGATCGACTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAAGTGTTCGCTCACCTTTGGCCCAATGTCTCTTGATCCGTTATACAAGTCAGGTTATTCGTGAGTCAGGAAATTCTACACAATCAGGGGACCGCCCCTTCTATGATTTTCTTGAAAGTTGCCTTCGTCACAAGTCAGAAATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGACCTTAATGGGGTAACTAGCCGTGAATTAACTCCAGCAATTACTGTTCTTCAGCTCTTCCTAAGTTCTTCCAAGCCAGTTTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACTCTTTTGAAGACAGGAAATGAATCAAGTGTGGATCGTCTCATGAAGCAGATTACAAATTTCATGTCTGATATTGCAGACGAGTTcaaaattgttgttgttgaagcaATAAGATCATTGTGCTTGAAGTTTCCTTTAAAATATAGATCTTTGATGAATTTCCTGAGTAACATTCTTAGGGAAGAAGGTGGTTTCGATTACAAGAAAGCAATTGTTGATTCAATAGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTCTGTGAGTTCATTGAAGATTGTGAATTCACTTACCTGTCTACACAGATACTCCACTTCCTTGGAATTGAAGGACCAAAAACAGTGGACCCCAGCAAATATATTCGGTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTTAGGGCCAGTGCTGTGAGCACACTGGCCAAATTTGGTGCTTCTGTTGAAGAATTACAGCCCCGCATATTTGTTCTGCTAAGGCGGTGTCTTTTTGACAGTGATGATGAGGTTCGGGATAGAGCCACCCTTTATCTGAACACCCTTGGAGGTGATATTGAGATTGATAAAGATGTGAGGGACTTCCTCTTTGGCTCACTTGATATCCCGCTCGTCAATCTGGAGACTAGTTTGAAAAAATACGAGCCTTCAGAAGAGGCTTTTGACATTAATTTGGTGCCCAGGGAGGTCAAGTCTCAGCCTCTTGCAGAGAAGAAGGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGCCCCCCATCCACTGTAGATTCATATGAAAGGCAACTTCTGTCAATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATACGCATGTTGTGTTTCAGTACAACTGCACAAATACGATACCTGAACAACTATTGGAAGATGTTATTGTAATCGTGGATGCTTCAGAAGCAGAAGAATTTTCTCAGGTTATCACCAAGCCCCTCAGATCTCTTCCTTATGACTCACCGGGGCAGACTTTTGTGGCATTTGAGAAGCCTGAGGGATTGCCAACAACTGGAAAGTTTTCTAACATTCTGAAATTTATTGTTAAAGAGGTACTTTTTCCCTTTATTTGA	2241	0.4159	MAQPLVKKDDDRDDEADYSPFMGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGNSTQSGDRPFYDFLESCLRHKSEMVIFEAAKAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTVDPSKYIRYIYNRVHLENATVRASAVSTLAKFGASVEELQPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDIEIDKDVRDFLFGSLDIPLVNLETSLKKYEPSEEAFDINLVPREVKSQPLAEKKAPGKKPTGLGAPPSGPPSTVDSYERQLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDTHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSQVITKPLRSLPYDSPGQTFVAFEKPEGLPTTGKFSNILKFIVKEVLFPFI	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02382	746	Pfam	Adaptin N terminal region	29	540	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Tsu02g02382	746	Gene3D	-	23	316	IPR011989	-
	Tsu02g02382	746	Gene3D	-	334	554	IPR011989	-
	Tsu02g02382	746	Pfam	Coatomer gamma subunit appendage platform subdomain	619	741	IPR013040	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Tsu02g02382	746	SUPERFAMILY	ARM repeat	30	559	IPR016024	-
	Tsu02g02382	746	MobiDBLite	consensus disorder prediction	591	619	-	-
	Tsu02g02382	746	PANTHER	COATOMER SUBUNIT GAMMA	1	741	IPR017106	-
	Tsu02g02382	746	PIRSF	Gamma-COP	7	744	IPR017106	-
	Tsu02g02382	746	PANTHER	COATOMER SUBUNIT GAMMA	1	741	-	-
	Tsu02g02382	746	SUPERFAMILY	Clathrin adaptor appendage domain	614	741	IPR013041	-
	Tsu02g02382	746	Gene3D	Coatomer, gamma subunit, appendage domain	614	742	IPR037067	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02382	Tsu-Chr2	24329416	24335943	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02382	K17267		-	gmx:100791801	1363.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g02382	02	24329416	24335943	Tsu02g02382	02	24329416	24335943	ECH