Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02378 ATGGAGGAAAAACGCCCTCCATCCTCCGTCGATACACCGGCATCAGAACCACCACCATCTCGCCGCCGTGCCGGAGGTAACAAGAGAAAATCAGGCTCACTCAACGCCTCAAATTCCTCTTCAACTTCCTCCAAACGCATTACTCGCGAGAAAGCTTCACCTCTTCACCATCCTCCTCTCCATAACGGTCCTTTAACTAGGGCTCGTCAAATCCCTAACAATTCCTCAACCGCATCTACTTCTACCGTCGCCGGTTCCGCTTCTGCTCCCGCCGCGGTTAAACATGCTCCACAGACACAGGCTTTGGCTGTGGCGGCGGAGCAGCTTAAGAAGGAGAGCGAGTGGGAGTCTCTGGAAGCTGAAATTGAAGCTGAATTTAAAGCTATTAGATCTCGTGATGCTAACGCTCATGTTGTTCCTGCTCATTGTGGTTGGTTTTCATGGTTGAATATCCATTCAATCGAGAAACGTATGATGCCTTCTTTCTTTGATGGAAAAACTGAAAATCGAACTCCTGATAAATACATGGAGATACGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACATTCAAATCGAATTGAAAGATTTATCAGACCTTGACATTGGGGATTTGGATGCTAGGCAAGAGGTAATGGAATTTCTTGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAACGGATTCTGCTGTGGCCAGCACCGGTGATGATGTGGAAGCAGAAAAGAAATCCTTGCTTCAAAAATTCTATCACTTTGATACTCTCCAAATATACCCGCCTGCTATTCAGAAGACTAGCTTAGtgactccagttatgacctctGGCTTGTTTCCAGAGTCAGCGATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTCGAGATGCTCGAGTACCATTGCAACTCCTGTTCTGGTGATTGTTCTCGCAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATCTATGTACGGACTGCTTCAATAATAGAAAATTTGGCTCCGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCGGAAGCTGCAGGGGTTAGTAGTGGAAAGTGGACGGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAGCTTTATAAAgaaaattggaatgaaattgcagagcatgttggaacaaaatcaaAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGTGGATGCCTTTGTGGActgtgatgatgatgttgatgctgGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACAATTTGTCTATAGatgaaaacaaagataaaaaagaTGAAGACAAAGATAAAACAGATGAAGACaaagataaaaaagataaagataaagatgcTTCAGAAATTATTGAGAACGACACTAGTGATAGCATCAAAGGCCATGATGAAACTTCTCAGGCTGAAGATGTTAAAGTGAAAGATAATCAAGAGGAGACTCCAAAGTTACACGATGGTAGTGATGAGAAAACTAATGAGGAAACTTCTAAATTAGAAGATGATATTAAACCAAAATTGGGTGAGGAAGTAGGTGATGACTGTGTTTTAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCGTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTTCACAGTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATACTCCTGGCACTGAGATTGCTTCAAGGTGTTGCTTTCTTCTAGAAGATCCACCAGATGATAAGAAGGAAACAACTACTTCTGAGGGGGATTTTAAAAGAAAGGGAGATCAGACTGACAAGAGTGTACAACAGGATACAGCAATGTTAGATGATAAAGATGTAGAAAACGATCCCCAGAAAACAAAAATTGCCGGTGATGCTTCAGAAGACAAGATACATCTGGCTTCTACAGATGGTGGAATctcagaaaaatcaatttcttcgAAGGGGCAGGAAATGGTTAATAATGACTGTGGGGTTTACAATGGTAATGATCCCAGCATTTCAAAGGCACCAAAAGATCATGCTCAGGGTACTCTGCATAATCTAGGTGATTCAACATCCAAAGTTGAAATTCCACCACCTAGTTCTGAGGAGGTTCAAGAGGGAACTTCAAAAGAAGAACCTTGCCATCCTATAGAGGAACAAAAAGAAGGAAGTATGTCTGATTCTCATCCATCTGAAAAGAATGGACTTCAACAGTCAATTAAATCCAATTTACCAGTTGAGCTGCCAAAGCCAGTAGAGACACCCAAATATGATGAAATGGCGTCTGATTCTATGCCCTCAGATAAGAGCAAGCCTCAAAAACAGCTATCTACAAATGCAGTCTCTGAGTCTCAGAAAACTACAGACTCTGCAATGGATGTTGATGTAGTTTCTAGTTCCTTGCCATCAAAGATTGACTCCCAGCCACCAATATCTTCGCAAGATAATGGGACAGAAAAGGATGTTGATATGGTGTCACCTTCACAGCCAATTAGATCGAATTTGGGTGCTGAAAATGGTGCAAGTGCagGGGCAGTTGAAGATCATGCAAGAAATGGTAAGGAAGTGAAGAATGACGGTACAAAGACTAAACAGGACAGTAGCTTTGAGAAAGTAAAACGTGCAGCTGTTTCTACACTAGCAGCAGCAGCAGTGAAGGCAAAACTTCTAGCAAATCAAGAAGAAGATCAAATCCGGCAACTTACTTCATTATTGATAGAAAAGCAGCTATATAAGTTGGAAGCGAAGTTGGCTTTTTTCAATGATTCGGAAAATGTGGTGATGAGAGTAAAGGAGCTTTTAGAGCGGTCGCGGCATAAGCTTTATCATGAACGTGCTTTGATAATTGCATCCCGCCTTGGTGTATCGGGAGGGTCCAGAGGTTTTCCACCATCCATAATCGATAGAGCTATGAATTACACAAATTCACTCCCAAGACCACAAATCACCATGAATCCCCAAGGGCCACTGATTTCTAGACCTGTGAGCTCCACAGGTACTACCCTTCCAAACCCATTAATGTCTGCAACTGCAGCAGGAAGTTCAGTTCGGCCATCCAGCCAAGAAAACCTTTCTTCCGTTGggacaaaataa 3171 0.4081 MEEKRPPSSVDTPASEPPPSRRRAGGNKRKSGSLNASNSSSTSSKRITREKASPLHHPPLHNGPLTRARQIPNNSSTASTSTVAGSASAPAAVKHAPQTQALAVAAEQLKKESEWESLEAEIEAEFKAIRSRDANAHVVPAHCGWFSWLNIHSIEKRMMPSFFDGKTENRTPDKYMEIRNWIMKKFHSNPNIQIELKDLSDLDIGDLDARQEVMEFLDYWGLINFHPFPSTDSAVASTGDDVEAEKKSLLQKFYHFDTLQIYPPAIQKTSLVTPVMTSGLFPESAIAEELVKQEGPAVEMLEYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGSGMSSLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIVDAFVDCDDDVDAGSKETADPAATNNNLSIDENKDKKDEDKDKTDEDKDKKDKDKDASEIIENDTSDSIKGHDETSQAEDVKVKDNQEETPKLHDGSDEKTNEETSKLEDDIKPKLGEEVGDDCVLNALKEAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLSQLVGSDVAVASAHNYIKSLSGNTPGTEIASRCCFLLEDPPDDKKETTTSEGDFKRKGDQTDKSVQQDTAMLDDKDVENDPQKTKIAGDASEDKIHLASTDGGISEKSISSKGQEMVNNDCGVYNGNDPSISKAPKDHAQGTLHNLGDSTSKVEIPPPSSEEVQEGTSKEEPCHPIEEQKEGSMSDSHPSEKNGLQQSIKSNLPVELPKPVETPKYDEMASDSMPSDKSKPQKQLSTNAVSESQKTTDSAMDVDVVSSSLPSKIDSQPPISSQDNGTEKDVDMVSPSQPIRSNLGAENGASAGAVEDHARNGKEVKNDGTKTKQDSSFEKVKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLYKLEAKLAFFNDSENVVMRVKELLERSRHKLYHERALIIASRLGVSGGSRGFPPSIIDRAMNYTNSLPRPQITMNPQGPLISRPVSSTGTTLPNPLMSATAAGSSVRPSSQENLSSVGTK 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 710 730 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 605 893 - -
Tsu02g02378 1056 Pfam Myb-like DNA-binding domain 360 402 IPR001005 -
Tsu02g02378 1056 SUPERFAMILY RING/U-box 295 352 - -
Tsu02g02378 1056 ProSiteProfiles SWIRM domain profile. 137 234 IPR007526 GO:0005515
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 792 862 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 30 48 - -
Tsu02g02378 1056 Gene3D - 297 346 IPR043145 -
Tsu02g02378 1056 SMART zz_5 299 343 IPR000433 GO:0008270
Tsu02g02378 1056 SUPERFAMILY Homeodomain-like 133 231 IPR009057 -
Tsu02g02378 1056 SUPERFAMILY Homeodomain-like 357 405 IPR009057 -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 1 92 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 421 523 - -
Tsu02g02378 1056 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 38 1020 - -
Tsu02g02378 1056 ProSitePatterns Zinc finger ZZ-type signature. 305 331 IPR000433 GO:0008270
Tsu02g02378 1056 SMART sant 358 406 IPR001005 -
Tsu02g02378 1056 ProSiteProfiles Zinc finger ZZ-type profile. 300 354 IPR000433 GO:0008270
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 755 770 - -
Tsu02g02378 1056 Pfam Zinc finger, ZZ type 302 337 IPR000433 GO:0008270
Tsu02g02378 1056 CDD SANT 378 403 IPR001005 -
Tsu02g02378 1056 Gene3D - 357 408 - -
Tsu02g02378 1056 ProSiteProfiles SANT domain profile. 357 408 IPR017884 -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 1005 1056 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 435 523 - -
Tsu02g02378 1056 PANTHER SWI/SNF COMPLEX-RELATED 38 1020 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 67 87 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 670 693 - -
Tsu02g02378 1056 Gene3D - 143 228 IPR036388 -
Tsu02g02378 1056 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 396 IPR017930 -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 731 754 - -
Tsu02g02378 1056 CDD ZZ_RSC8 303 347 IPR041984 -
Tsu02g02378 1056 Pfam SWIRM domain 140 225 IPR007526 GO:0005515
Tsu02g02378 1056 ProSiteProfiles Myb-like domain profile. 354 404 IPR001005 -
Tsu02g02378 1056 Pfam SWIRM-associated region 1 905 981 IPR032451 -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 874 893 - -
Tsu02g02378 1056 MobiDBLite consensus disorder prediction 605 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02378 Tsu-Chr2 24287940 24296120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02378 303 400 EF-hand Containing Proteins AT3G07740 37.383 1.36e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02378 K11649 - gmx:100799723 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02378 02 24287940 24296120 Tsu02g02378 02 24287940 24296120 ECH