Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02350 ATGGACATTGATTTCAAAGAATATCACTTACGCTGTGAACTTCACGGTCACGAAGACGACGTTCGTGGAATAACCGTCTGTGGTGCCGATGCCAGAATAGCGACATCATCAAGGGATAAAACGATTAGGTTATGGACTCAGGACAATCGGAAATTCGTTTCTTCGAAAGTTCTTGTTGGACACACTAGCTTTGTGGGTCCCATAACATGGATTCCTCCTAGTTCTGATTTGCCGCATGGTGGTGTTGCTTCTGGTGGCATGGATACTCTTGTATTGGTTTGGGACTTGAACACTGGTGAGAAAGTTCAGACTCTTAAAGGTCATCAATTGCAGGTTACTGGCATTGCTTTTGATAATGGAGATCTTGTTTCATCTTCTATTGATAGTACTTTGAGACGGTGGAGGAGTGGGCAATGTATAGAGACATGGGAGGCTCACAAGGGACCGATTCAAGCAGTTATAAAGCTACCCACCGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGACTTGGAAGGGAAAAACTTGTTTACATACTTTTGTAGGACATTCAGATACGGTACGTGGCTTGGCTGTGATGTCTGATCTTGGAATCCTATCTGCATCACATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGCGAAGTGTTAATGGAGATGGTTGGCCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGCGGTAGCGAAGACCGCTTTGCAAAAATATGGAAAGATGGAGTATGTGTTCAAAGCATAGAGCATCCTGGTTGTGTTTGGGATGCAAAATTTATGGAAAGCGGGGATATTGTCACCGCATGTTCCGATGGAATTGTACGTATTTGGACTGTAAATCAGGATTATTTTGCTGACCAGCTAGAGCTTGATTTATACACTTCACAACTTTCTCAATACAAGTCTAGTAGAAAAAGGGTTGGGGGATTAAAGTTGGAGGAGTTACCAGCCTTGGATGCACTGAAGATACCAGGAACTTCTGATGGCCAGACAAAAGTAGTCAGAGAGGGAGATAATGGTGTTGCATATGCATGGAACATGGCAGAACAAAAATGGGATAAAATTGGTGAAGTTGTTGACGGGCCAGAAGGATCAAATCGTCCTCTCTTTGATGGTGTTCAGTATGATTATgTGTTTGATGTGGATATTGGAGATGGTATGCCTATCAGGAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAGTCTTCCTCTATCCTTTCGTGAGCAAGTTGTACAGTTCATACTTCAAAATTCTGGACAAAAGGATATTACTTTTGATGCTTCATTTCGTGACCCATACACTGGCTCCAATGCTTACGTACCAGGTCAACATTCACGCACATCTGATATCTCTGTGAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATACAGCTCAGTTTGATGGGATCCTTAAAAAGATTGTCGAGTTCAATAATGCCTTGTTATCCGACCAGGAAAAGCAGAAGCTGTCTTTGACTGAGTTGGATGTTTCCAGACTGGATGCCATTGTTAAAACACTGAAAAATACTTCATATTATCATTCCAGTAAAATTGCAGACTCTGAAATAGCCTTGCTACTGAACATGCTATGTTCATGGCCAATCACAATAATATTTCCTGTCATTGATATTGTAAGGATGGTAGTTCTTCACCCAGATGGGGCTAATGCATTGCACAAGCATTTATCTGAAAAAGACGTTTTAATTGAAGTGATTAAGAAGGTCACCGTTAACCCGACCGTTCCTGCAAATCTGTTGACCAGCATTCGTGCTGTCACTAATCTCTTTAAGAATTCATGCTTCTACAACTGGTTGCAGAAACATCGCAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTACAAACAAAAATCTGCAGTTGTCCTACTCTACCTTGATTCTCAATTATGCAGTGCTATTGATTGAATCTAAGGATCAAGAAGGCCAATCTCAAGTTCTATCTGCAGCACTTGAGattGCCGAGGATGAAAATGTAGGTCCTGATTCCAAATTTCGTGCTTTAGTCGCTGTTGGATCACTGATGATCGAGGGACTAGTTAAAAAGATAGCATTGGACTTTGATGTCTTAAGCATTGCAAAAGCAGCCAAGGGTTCTAAGGACTCCAAGATTGCTGAAGTTGGATCTGACATAGAGTTGGCATCAAAGCAAAGTTAA 2268 0.4114 MDIDFKEYHLRCELHGHEDDVRGITVCGADARIATSSRDKTIRLWTQDNRKFVSSKVLVGHTSFVGPITWIPPSSDLPHGGVASGGMDTLVLVWDLNTGEKVQTLKGHQLQVTGIAFDNGDLVSSSIDSTLRRWRSGQCIETWEAHKGPIQAVIKLPTGELVTGSSDTTLKTWKGKTCLHTFVGHSDTVRGLAVMSDLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFMESGDIVTACSDGIVRIWTVNQDYFADQLELDLYTSQLSQYKSSRKRVGGLKLEELPALDALKIPGTSDGQTKVVREGDNGVAYAWNMAEQKWDKIGEVVDGPEGSNRPLFDGVQYDYVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKESLPLSFREQVVQFILQNSGQKDITFDASFRDPYTGSNAYVPGQHSRTSDISVKPTFKHIPKKGMLVFDTAQFDGILKKIVEFNNALLSDQEKQKLSLTELDVSRLDAIVKTLKNTSYYHSSKIADSEIALLLNMLCSWPITIIFPVIDIVRMVVLHPDGANALHKHLSEKDVLIEVIKKVTVNPTVPANLLTSIRAVTNLFKNSCFYNWLQKHRSEILDAFSSCSSSTNKNLQLSYSTLILNYAVLLIESKDQEGQSQVLSAALEIAEDENVGPDSKFRALVAVGSLMIEGLVKKIALDFDVLSIAKAAKGSKDSKIAEVGSDIELASKQS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02350 755 ProSiteProfiles PUL domain profile. 481 751 IPR013535 -
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 137 174 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 56 95 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Tsu02g02350 755 Pfam WD domain, G-beta repeat 13 45 IPR001680 GO:0005515
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 45 - -
Tsu02g02350 755 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 750 - -
Tsu02g02350 755 CDD WD40 10 290 - -
Tsu02g02350 755 Gene3D - 4 308 IPR015943 GO:0005515
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 104 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 51 95 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 136 174 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 7 46 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 98 135 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 215 253 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 175 213 IPR001680 GO:0005515
Tsu02g02350 755 SMART WD40_4 254 291 IPR001680 GO:0005515
Tsu02g02350 755 Pfam PFU (PLAA family ubiquitin binding) 337 445 IPR015155 -
Tsu02g02350 755 ProSiteProfiles PFU domain profile. 357 452 IPR015155 -
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 212 IPR001680 GO:0005515
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 134 IPR001680 GO:0005515
Tsu02g02350 755 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 750 - -
Tsu02g02350 755 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Tsu02g02350 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Tsu02g02350 755 SUPERFAMILY WD40 repeat-like 5 306 IPR036322 GO:0005515
Tsu02g02350 755 Pfam PUL domain 483 747 IPR013535 -
Tsu02g02350 755 Gene3D - 376 450 IPR038122 -
Tsu02g02350 755 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Tsu02g02350 755 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Tsu02g02350 755 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Tsu02g02350 755 Gene3D - 481 750 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02350 Tsu-Chr2 23842626 23854246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02350 1 754 Acyl Lipid Metabolism Gene Families AT3G18860 69.960 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02350 K14018 - gmx:100816481 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02350 02 23842626 23854246 Tsu02g02350 02 23842626 23854246 ECH