Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02348 ATGGCTTTCCGTGCCAACTTTTGCCGTCTCCCAGCCACTCGCATTGGCGTTTCTTCTCCGGATAGAATCCGGTGCTCGAAAGTGTTCACTGTCCGTTGTTCAGCCGACTCTGATTTTGATCCAAAGGTGTTCCGAAAGAACCTCACGAGAGGTGAGAATTATAACCGCAAAGGCTTTGGACGCAAGGAAGAGACACTCAAACTCATAAATCGCGAATACACCAgTGATATCATTGAGACATTGAAGGAAAATGGGTATGAGTATACATGGGGTAATGTCACTGTGATGCTAGCTGAAGCCTTTGGCTTTTGTTGGGGGGTTGAGAAGGCTGTTCAAATTGCTTATGAGGCAAGAAAACAGTTTCCTAAGCACAAAATTTGGATCACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTAGAGGAGATGGAAGTGGAGCGTATTCCGGTTGTAGAAGGAAAGAAACAATTTGAGGTTGTGAACGAGGGTGATGTAGTCATATTACCTGCTTTTGGAGCCGCAGTCGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGCCAGTATGTTACAAAGGTATGGAATGTTGTCGAAAAGCAAAAAAAAGGAGATTATACCTCAATAATTCATGGTAAATATGCCCATGAGGAAACAGTAGCAACTGCATCCTTTGCTGGAAAGTACAtaattgtgaaaaatatggctgAGGCTCAATATGTTTGCGATTATATTCTCGGTGGTGAACTAAATGGATCCAGCTCAACCAGAGAGGCTTTTTTCGAGAAATTTAAATTTGCAGTTTCTAAGGGCTTTGATCCAGACAATGACCTGATAAATGTCGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGAAAACTGGTGGAGAGGACTATGATGCGCAAATATGGCGTGGAAAATGTTAATGAGCACTTCATAAGCTTCAACACAATTTGTAATGCTACTCAGGAGCGACAAGATGCTATTTACAATCTGGTGGAGAAAGATATGGATCTTATGTTAGTTGTTGGTGGCTGGAACTCGAGCAATACATCACACCTTCAAGAGATAGCCGAGGAACGTGGAATTCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCATGGTGAGCTTGTAGAGAAAGAAAACTTTCTACCAAAGGGTCCATTAAGGATTGGTGTAACATCTGGTACATCCACACCAGACAAGGTTGTGGGAGATGCGCTTATCAAGGTGTTTGACTTGAAAAGGGAAGAAGGATTTTAG 1338 0.4141 MAFRANFCRLPATRIGVSSPDRIRCSKVFTVRCSADSDFDPKVFRKNLTRGENYNRKGFGRKEETLKLINREYTSDIIETLKENGYEYTWGNVTVMLAEAFGFCWGVEKAVQIAYEARKQFPKHKIWITNEIIHNPTVNKRLEEMEVERIPVVEGKKQFEVVNEGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCQYVTKVWNVVEKQKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAQYVCDYILGGELNGSSSTREAFFEKFKFAVSKGFDPDNDLINVGIANQTTMLKGETEEIGKLVERTMMRKYGVENVNEHFISFNTICNATQERQDAIYNLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPKGPLRIGVTSGTSTPDKVVGDALIKVFDLKREEGF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02348 445 Gene3D - 329 444 - -
Tsu02g02348 445 CDD lytB_ispH 95 429 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02348 445 Pfam LytB protein 95 431 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02348 445 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 24 443 - -
Tsu02g02348 445 Gene3D - 195 328 - -
Tsu02g02348 445 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 95 432 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02348 445 Gene3D - 104 194 - -
Tsu02g02348 445 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 93 440 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02348 Tsu-Chr2 23827358 23830791 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02348 K03527 - gmx:100818067 758.444