Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02347 ATGGCTTTCTGTTCGCATCTTTGCCGTTTCCCCGCCACTCGCATCGACGTTCCTTCACCGGAAAAAATCCGTTACCGGAAAATCTTCTCTGTTCGTTGTTCCTCTGACTCCAATTTCGATCCAAAAGTTTTCAGGAAAAACCTCACAAGAAGTGAGAATTATAACCGTAAAGGCTTTGGTCACAAAGAAGAAACCCTCAAACTCATGAATCGAGAATACACAAGTGATATTATTAAGACTTTGAAGGAAAATGGATATGAGTATACATGGGGTAATGTTACTGTGATGCTAGCTGAAGCCTTTGGCTTTTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTATGAGGCGAGAAAACAGTTTCCTGATGACAAAATTTGGATTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTGGAGGATATGGAAGTGCAGAACATTCCTATTGGAGAAGGAAAGAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATATTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGCCCGTGGGTTTCAAAGGTATGGAATGTTGTTGAAAAGCACAAAAAAGGAGATTATACTTCGATAATTCATGGTAAATACGCACATGAGGAAACTGTAGCAACTGCATCTTTTGCTGGAAAGTACATAATTGTGAAAAACATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAACTTAATGGATCCAGCTCAACCAGAGAGGCATTTTTTGAGAAATTCAAATTTGCACTTTCTAAGGGCTTTGATCCAGACAGTGACCTGATAAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACCGAAGAGATTGGGAAACTAGTGGAGAGGACAATGATGCGCAAATATGGCGTGGAAAACGTTACTGAGCACTTTATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATTTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTTGTTGGTGGCTGGAACTCGAGTAATACATCGCACCTTCAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGATAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCACACAAATTGAATCATGGCGAACTCGTGGAGAAAGAAAACTTTCTGCCAAAGGGTCCATTAAGGATTGGTGTAACATCTGGTGCATCTACACCAGACAAGGTCGTGGAAGACGCACTTATCAAGGTGTTTGACTTGAAAAGGGAAGAAGCATTACAACTCGTCGCGTAA 1350 0.4133 MAFCSHLCRFPATRIDVPSPEKIRYRKIFSVRCSSDSNFDPKVFRKNLTRSENYNRKGFGHKEETLKLMNREYTSDIIKTLKENGYEYTWGNVTVMLAEAFGFCWGVERAVQIAYEARKQFPDDKIWITNEIIHNPTVNKRLEDMEVQNIPIGEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTREAFFEKFKFALSKGFDPDSDLIKLGIANQTTMLKGETEEIGKLVERTMMRKYGVENVTEHFISFNTICDATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAHKLNHGELVEKENFLPKGPLRIGVTSGASTPDKVVEDALIKVFDLKREEALQLVA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02347 449 Gene3D - 195 328 - -
Tsu02g02347 449 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 32 446 - -
Tsu02g02347 449 Gene3D - 104 194 - -
Tsu02g02347 449 Pfam LytB protein 95 433 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02347 449 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 93 440 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02347 449 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 95 433 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tsu02g02347 449 Gene3D - 329 447 - -
Tsu02g02347 449 CDD lytB_ispH 95 433 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02347 Tsu-Chr2 23817792 23821534 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02347 K03527 - gmx:100818067 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02347 02 23817792 23821534 Tsu02g02347 02 23817792 23821534 ECH