Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02336 ATGAGGTCTCGAATAGTGAGAGATGCAGTTGTATACCGTGACCATGTTCAAGCAATAAAATCTGGTTTTGTATCAAGTATTTTCACTTGTAATCAACTCATTCACCTTTATTCTAATCATGGTCTTTTACAAGATGCCCACAAACTGTTCGACGAAATTTCCCATCCAAATGTATTCTCTTGGAATGCCCTTATTAGGGCATACATCAAAGCACACAACTTGACAAAAGCAAGAGCCATTTTTTACTCTGCCTCTAATAAAGATTTGGTTTCTTATAATTCCATGCTGTCGGCTTATGTTGGTGCTGACGGATATGAAACTGAGGCGCTTGATTTGTTTGCAAGAATGCAATCTGCACGTGACACAATTGGGATTGACGAGTTCACTCTTACGACAATGCTTAACTTTACTGCCAAGCTACGTGTTGTGTGTTATGGGAAGCAGATGCATTCGTATATGGTGAAAACTGCAAGTGATTTAAGCAAGTTTGCATCGAGTTCTCTTATTAACATGTACTCTAAGTGTGGTTTGTTTCATGAAGCGTGTAATGTCCTTAATGGTTGTGATGGGGTGGTGGACTTGGTTTCAAAGAATGCAATGGTTGCTGCTTGTTGCAGGGAAGGAGAGATGGACATGGCTTTAAATGTGTTTTGGAAAAATTCTGAATTGAATGATACTGTTTCTTGGAATACATTGATTGCAGGATATGCCCAGAATGGATATATGGATAAAGCACTTGCCTTGTTTGTTGAGATGATTGAAAGAGGTATTAAGCATGATGAACATACTTTAGCGAGTGTTTTAAGTGCTTGCTCTGGCCTAAAATATTTGAAACTTGGCAAGTGCATCCATGCATGGGTGTTGAAAAATGACTTCAGTTCAAATCAGTTCATTAGCAGTGGCATCGTAGACTTATACTGTAAGTGTGGGAATATTAGGTATGCGGAGTCAGTGTATGAAGGAATTGGGATTAAAAGCCAATTTGAAGTTGCTTCGTTAATTGTAGGTTATTCATCTCAAGGTGACATGACAAAAGCCCTAAAGCTTTTTGATACTCTATCGGAAAGAAATTGTGTTGTCTGGACAGCTCTATGTTCCGGCTATGCCAAATTGCAACAATGTGAGGAAGTCTTTAAACTTTTCAGAGAGTTTATAATTACAGAAGCACTAATTCCTGATGCAATGATCATCATCAGTGTGCTTGGTGCATGTGCAACACAAGCCATCCTTTGTTTGGGAAAGCAGATTCATACATACATCTTGAGAATGAGACTTAATATGGATAAAAAAGTGCTGAGTGCTATAGTTGATATGTACTCAAAATGTGGTAATATCATGTATGCCGAGAAAAGCTTCCAACTAATGACTGATAAGGATAGAGATGCAATCTTATACAATGTCATGATAGCTGGTTATGCTCatcatggttttgaaaataaaGCTATTCAGCTTTTTCAGGACATGTTGAAGAAAAATGTCAAGCCAGATGCAGTCACTTTTGTAGCACTTCTATCTGCTTGTCGGCACCGTGGACTAGTAGAACAAGgagagaaattttttatttctatggaaGAAGATTACAATGTACTGCCCGAGGTATACCACTATGCATGTATGGTTGATATGTATGGAAGGGCCAATCAAGTAGAAAAGGCACTAGAATTCATGAGGAAGATTCCCATACAGATAGATGCTACAATTTGGGGAGCATTTGTTAATGCTTGTCAGATAAACAAAAATACATCACTTGTCAACAAAGCAGAAGAGGAACTATTAAAACTTGGGGCAGATAATGGGTCTCGGTTTGTGCAATTGGCCAATATCTATGCTGCTGAGGGGAAATGGGATGAGATGGGAAGAataaggaagaaaatgagagtgaAGGAGGCAAAAAAGCTTGTTGGTTGCAGTTGGATATATGTGGAAAATGGTACTCATGCATTTACTTCTGGGGATACATCTCATGCAAAAGCAGATGCAATATATTCAACTTTGATGTGCTTGAATGGGAAAGAACTGAAGCATCTTCATGAAATTTGGGGGTGA 2046 0.3763 MRSRIVRDAVVYRDHVQAIKSGFVSSIFTCNQLIHLYSNHGLLQDAHKLFDEISHPNVFSWNALIRAYIKAHNLTKARAIFYSASNKDLVSYNSMLSAYVGADGYETEALDLFARMQSARDTIGIDEFTLTTMLNFTAKLRVVCYGKQMHSYMVKTASDLSKFASSSLINMYSKCGLFHEACNVLNGCDGVVDLVSKNAMVAACCREGEMDMALNVFWKNSELNDTVSWNTLIAGYAQNGYMDKALALFVEMIERGIKHDEHTLASVLSACSGLKYLKLGKCIHAWVLKNDFSSNQFISSGIVDLYCKCGNIRYAESVYEGIGIKSQFEVASLIVGYSSQGDMTKALKLFDTLSERNCVVWTALCSGYAKLQQCEEVFKLFREFIITEALIPDAMIIISVLGACATQAILCLGKQIHTYILRMRLNMDKKVLSAIVDMYSKCGNIMYAEKSFQLMTDKDRDAILYNVMIAGYAHHGFENKAIQLFQDMLKKNVKPDAVTFVALLSACRHRGLVEQGEKFFISMEEDYNVLPEVYHYACMVDMYGRANQVEKALEFMRKIPIQIDATIWGAFVNACQINKNTSLVNKAEEELLKLGADNGSRFVQLANIYAAEGKWDEMGRIRKKMRVKEAKKLVGCSWIYVENGTHAFTSGDTSHAKADAIYSTLMCLNGKELKHLHEIWG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02336 681 SUPERFAMILY HCP-like 334 558 - -
Tsu02g02336 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Tsu02g02336 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Tsu02g02336 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Tsu02g02336 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Tsu02g02336 681 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Tsu02g02336 681 TIGRFAM PPR: pentatricopeptide repeat domain 332 360 IPR002885 -
Tsu02g02336 681 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Tsu02g02336 681 TIGRFAM PPR: pentatricopeptide repeat domain 28 53 IPR002885 -
Tsu02g02336 681 TIGRFAM PPR: pentatricopeptide repeat domain 59 87 IPR002885 -
Tsu02g02336 681 Pfam E motif 581 639 IPR046848 -
Tsu02g02336 681 Pfam PPR repeat 332 358 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat 359 383 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat 166 186 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat 535 558 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat 196 217 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat 90 118 IPR002885 -
Tsu02g02336 681 Pfam Pentatricopeptide repeat domain 21 68 IPR002885 -
Tsu02g02336 681 Gene3D Tetratricopeptide repeat domain 513 660 IPR011990 GO:0005515
Tsu02g02336 681 Gene3D Tetratricopeptide repeat domain 414 512 IPR011990 GO:0005515
Tsu02g02336 681 Gene3D Tetratricopeptide repeat domain 17 141 IPR011990 GO:0005515
Tsu02g02336 681 Gene3D Tetratricopeptide repeat domain 277 411 IPR011990 GO:0005515
Tsu02g02336 681 Gene3D Tetratricopeptide repeat domain 142 276 IPR011990 GO:0005515
Tsu02g02336 681 Pfam PPR repeat family 461 507 IPR002885 -
Tsu02g02336 681 Pfam PPR repeat family 225 271 IPR002885 -
Tsu02g02336 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 219 - -
Tsu02g02336 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 74 353 - -
Tsu02g02336 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 332 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02336 Tsu-Chr2 23729817 23731862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02336 63 665 Glycoside Hydrolase AT3G49170 31.353 4.29e-93 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02336 - - gmx:100803987 1094.34