Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02326 ATGATGAATCAAATTCAACTACCAAAACTCCTCCTACACCAACATCTCAAACACAACCAAAAACCCTTaaccctcttcttcttcttcttcttttcatcatcttcttcagaacaacaacaaaatacagTAACAAAAGCAGTTTCAATTCTCACAAATCAACGTTCAAAATCTCGTTGGAACACTCTCCATTCTCTCTACCCAACCACCATCAACCCCATCGATTTCTCTCAAATCACACTTCACCTCAACAACAAACCTCATCTCGCACTTCGTTTCTTTCAATGGACCAAATCCAAATCTCTCTGTCATCACAATCTCGCTTCTTATTCCACCATCATCCATATCCTCGCACGTGGTCGACTCTATTCACACGCTTACAATACCATCAGAACCGCCCTTACTCAAAACGACGATGAATACCGTCGTTTTGAGAGTTCTTCCACGCCGTTGAAGCTTTTTGAGATTCTTGTTAATTCTTATCGAGAGTGTGGTTCTGCtccttttgtttttgatttgttgattgaAGCTTGTTTACAATCTAGAAAAATTGAAGCTTCGATTGAAATTGTTAGAATGTTGATTTCGCGTCGGATTAGTCCTAAAGTTATGACATTGAATTCTTTGATTTCTAGGGTTTGTAGAAAATTTGGGGTGGATTTAGGGTATGAGATTTATAGGGAGATTTTTAGGTTAGATGtggaaaaatgtgaaattttgaaaagGGGTTCTGGTTTTAGAGTTGTTAACCCTAATGTGCATACTTTTAATACATTGATGTTGTGTTGTTATCAAAATGGTTTGGTGGAGAGGGTTGAAGATATTTGGGGTGAAATGAATTGTGATCCTAATGCTTATAGCTATAGTTTATTGATGTCTGCGTTTTGCGAGAGAGATAGGTTGGAAGATGCTGAGAAGTTGTGGGAAGAAATGAGGAAGAAGGAAATTGAGCCTGATGTGGTTAGTTATAATACTATGATTGGTGGGTTTTGTAAGATTGGTAATGTTGGAAGAGCTGAGGAATTTTTCAGAGAAATGGGATTGGTTGGTATTGATGCAACTGTATCAACTTATGAGCATCTTGTTAAGGGGTATTGTAATATTGAGGATGTTGATTCTGCTGTTCTTGTTTATAAGGATATGTTTAGGAAGGATTTTAGGCCTGATGTGTTAACACTTGATATGGTGGTTACGTTACTTTGTGATAAGGGTAGAATTAAGGAAGCTATGGAGTTTTTCAAGAGTGGAGTTGGTAAGTTTGATTTAGTTCCAAAGGGAAAGAGTTATGAGGCTTTGATTAAAGGATTGTGTGTTGAGGGGAGGATGGATGAGGGGTTGAAGCTTCAGACAGAGATGGTAGGAAAAGGGTTTGAACCGAATTCGGAAATATATGAAGCTTTTATTGATGGTTATATTAGGCAAGGGAATGATGAAATGGCTGAGGCTCTGAGGAAAGAAATGCTGCAAACTCCAAGTGCAGAGACAACAGAACAGTAA 1494 0.3574 MMNQIQLPKLLLHQHLKHNQKPLTLFFFFFFSSSSSEQQQNTVTKAVSILTNQRSKSRWNTLHSLYPTTINPIDFSQITLHLNNKPHLALRFFQWTKSKSLCHHNLASYSTIIHILARGRLYSHAYNTIRTALTQNDDEYRRFESSSTPLKLFEILVNSYRECGSAPFVFDLLIEACLQSRKIEASIEIVRMLISRRISPKVMTLNSLISRVCRKFGVDLGYEIYREIFRLDVEKCEILKRGSGFRVVNPNVHTFNTLMLCCYQNGLVERVEDIWGEMNCDPNAYSYSLLMSAFCERDRLEDAEKLWEEMRKKEIEPDVVSYNTMIGGFCKIGNVGRAEEFFREMGLVGIDATVSTYEHLVKGYCNIEDVDSAVLVYKDMFRKDFRPDVLTLDMVVTLLCDKGRIKEAMEFFKSGVGKFDLVPKGKSYEALIKGLCVEGRMDEGLKLQTEMVGKGFEPNSEIYEAFIDGYIRQGNDEMAEALRKEMLQTPSAETTEQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02326 497 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 10 490 - -
Tsu02g02326 497 Gene3D Tetratricopeptide repeat domain 264 367 IPR011990 GO:0005515
Tsu02g02326 497 Pfam PPR repeat 254 278 IPR002885 -
Tsu02g02326 497 Pfam PPR repeat 463 487 IPR002885 -
Tsu02g02326 497 Pfam PPR repeat 427 456 IPR002885 -
Tsu02g02326 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Tsu02g02326 497 Pfam PPR repeat family 353 400 IPR002885 -
Tsu02g02326 497 Pfam PPR repeat family 282 331 IPR002885 -
Tsu02g02326 497 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 10 490 - -
Tsu02g02326 497 Gene3D Tetratricopeptide repeat domain 76 233 IPR011990 GO:0005515
Tsu02g02326 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Tsu02g02326 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Tsu02g02326 497 TIGRFAM PPR: pentatricopeptide repeat domain 253 278 IPR002885 -
Tsu02g02326 497 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Tsu02g02326 497 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Tsu02g02326 497 TIGRFAM PPR: pentatricopeptide repeat domain 320 345 IPR002885 -
Tsu02g02326 497 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Tsu02g02326 497 Gene3D Tetratricopeptide repeat domain 368 497 IPR011990 GO:0005515
Tsu02g02326 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02326 170 487 Glycosyltransferase AT1G05670 26.398 2.76e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02326 - - mtr:MTR_0026s0200 700.664