Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02313 atGACAAACACAAAAGGTGCAGCCATGTTAATAGAAAGaaacactaataataataataacaacaacaaagttcATAGACCATCGTTTGGTGCTTTTCTTCGCTCCGAACCGACGTTATTTCACGGTACAATCAACGACGATGATCAAAGCCGTATCAGCAACGCCTCGGCCTCCACCGTGATTCCTCCAACTTACAGCAGCAGTAGCAACGATGCTTCACCTAGTTACATGATGTCACCATGGAACCAATCTTCTTCACCTCTCAACAAATCACCATGGTTAATGCCATCTTCAGAAGCTATCAATCTCTTCCATAATAGCCATCGTTACGATAACATCAACGACGACAGTTTCTTCCCCGAAAACGGCCTCATCGGATCGCTTGTTCGCGAAGAAGGTCATATCTATTCGTTAGCGGTTTCCGGTGACTTATTATACACTGGTTCCGATAGCAAAAATATAAGGGTATGGAAAGAACTTAAAGATTATACTGGTTTTAAATCAAGCAGTGGTTTGGTTAAAACCATTGTTATCTCCGATGGGAATATTTTTACTGGTCATCAAGATGGAAAAATCAGAGTAtggaaaaattcttcaaataattCACGAAATCATAAGCGCGTTGGAAGTTTACCAACTTTCAAAGATTATGTAAAAAGTTCGATGAATCCGAAGAATTATGTCGAAGTCCGGCGAAGGAGAAACATGgtgaaggtgaagcattttgaCGCAATTTCAAGTCTGAGTTTGGATCAAGATGAAGGGTTGTTGTATTCAGGTTCATGGGATAAAACTCTCAAAGTTTGGCGAGTTTCTGATTTCAAGTGTTTAGAATCGATTAATGCTCATGATGATGCGGTGAACGCTGTGGTTTGTGCATTTGAAAACTATGTTTTCACGGGCTCCGCCGACGGAACGGTGAAGATGTGGAAGAGGGAAATGGATGGAAAAGCAAAGAAAACGAAGCACGTCTTGGATAGGATTCTCTTGAAACAAGAAAATGCCGTGACGGCTTTAACAGTTAACCGTTCATTGACGGTTATATATTGCGGTTCGTCGGATGGATTGGTTAACTTCTGGGAATGTCAACAGAAGAATAATCTCACTCACGGTGGCGTTTTAAAGGGACACAAACTTGCAGTCTTGTGTATGGCAGCGGCGGGGAACCTCGTATTTAGTGGTTCCGCCGATAAGAATATTTGTGTGTGGAAGCGCGATGAGAGTGGGACCCACTTGTGTCTTTCGGTTTTAACGGGACATACAGGTCCCGTTAAATGCATTGCCATTGAAGAACACAAGGAGGAGGTTGACCGTGAAAAGGATAATCAAAGGTGGATAGTTTACACCGGAAGTTTAGATAAGTCTGTTAAGGTGTGGCGCGTGTCTGAACATGCGCCGGAGTTGAGATTATTCCAAGGTTGGACATCTTCCATTGCACCTTCCCCAATTAGCTTCACCACCAATAGTAATAGGAGCCagttgtaa 1485 0.4081 MTNTKGAAMLIERNTNNNNNNNKVHRPSFGAFLRSEPTLFHGTINDDDQSRISNASASTVIPPTYSSSSNDASPSYMMSPWNQSSSPLNKSPWLMPSSEAINLFHNSHRYDNINDDSFFPENGLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKELKDYTGFKSSSGLVKTIVISDGNIFTGHQDGKIRVWKNSSNNSRNHKRVGSLPTFKDYVKSSMNPKNYVEVRRRRNMVKVKHFDAISSLSLDQDEGLLYSGSWDKTLKVWRVSDFKCLESINAHDDAVNAVVCAFENYVFTGSADGTVKMWKREMDGKAKKTKHVLDRILLKQENAVTALTVNRSLTVIYCGSSDGLVNFWECQQKNNLTHGGVLKGHKLAVLCMAAAGNLVFSGSADKNICVWKRDESGTHLCLSVLTGHTGPVKCIAIEEHKEEVDREKDNQRWIVYTGSLDKSVKVWRVSEHAPELRLFQGWTSSIAPSPISFTTNSNRSQL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 404 IPR001680 GO:0005515
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 311 - -
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515
Tsu02g02313 494 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Tsu02g02313 494 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Tsu02g02313 494 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Tsu02g02313 494 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 475 IPR045182 -
Tsu02g02313 494 SUPERFAMILY WD40 repeat-like 126 466 IPR036322 GO:0005515
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 272 - -
Tsu02g02313 494 Pfam WD domain, G-beta repeat 372 404 IPR001680 GO:0005515
Tsu02g02313 494 Pfam WD domain, G-beta repeat 413 459 IPR001680 GO:0005515
Tsu02g02313 494 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Tsu02g02313 494 Pfam WD domain, G-beta repeat 132 158 IPR001680 GO:0005515
Tsu02g02313 494 Pfam WD domain, G-beta repeat 275 311 IPR001680 GO:0005515
Tsu02g02313 494 Pfam WD domain, G-beta repeat 241 269 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 322 361 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 273 311 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 410 460 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 159 196 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 232 270 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 367 404 IPR001680 GO:0005515
Tsu02g02313 494 SMART WD40_4 121 158 IPR001680 GO:0005515
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 311 IPR001680 GO:0005515
Tsu02g02313 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 370 IPR001680 GO:0005515
Tsu02g02313 494 CDD WD40 132 460 - -
Tsu02g02313 494 Gene3D - 99 219 IPR015943 GO:0005515
Tsu02g02313 494 Gene3D - 220 319 IPR015943 GO:0005515
Tsu02g02313 494 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 16 475 - -
Tsu02g02313 494 Gene3D - 320 493 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02313 Tsu-Chr2 23428115 23430451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02313 239 459 Miscellaneous Gene Families AT5G08390 24.554 8.97e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02313 - - gmx:100807706 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02313 02 23428115 23430451 Tsu02g02313 02 23428115 23430451 ECH