Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02291 atggtgTATGCTGCTTCACTCTCACTATCATCATTTCAACTTCCACTCTCACATGCTTTCAGCCCCAAAAGACCAAAATGCTTTCAATTTTCTGAATTTTCCAACAAATATAATTCCAGGCCTTTGCCAATGATtttatcttgttgctctcaggAAGGAAGCACTGCAGTTCAAGAATATGGGCAAGATGAGAGCAATGGGACGGTGAACAACGGATCAATCACAAACAACACCGTTTTGTGCAGCAATTCACCAGAGCTTCAGAAGAAAAGCCAACCTCCTCTAGTCAGTGCACTGAAAGCCTCAGCTGAAGTAAATGCTGCCAGTTTTCACTTTCCTGGACATAACAGAGGCCATGCTGCTCCTGCTTCATTGACTCGACTCATTGGAATTAGACCGTATGCTCATGATTTGTCCAGCATTCCTGAACTTGACAACCTCTTTTGTCCCCAAGGACCCATATTAGAAGCACAGGAAGAAGCAGCTAAACTGTTTGGATCATCAGAGACATGGTTTCTTGTCAATGGTACTACTTGTGGGGTGCACGCAGCAATAATGGCAACCTGTTCACCGGGAGAATTTCTGATTCTTCCGAGGAATTGTCATTTATCAGCTATATCTGCCTTGGTATTATCTGGTGCACTGCCTAAGTACATTGTTCCTGACTATAAAAATGACTGGGACATCGCTGGTGGTGTCACTCCATTACAGGTATTGAACACTATCCAGGAACTAGAATCCGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGGGTTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATACTCGAAAAATTCCTTTGATCGTTGATGAAGCTCATGGTGCACATCTCGGATTTCATTCTAAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTCGTTGTACAGTCTACTCACAAGGTTCTTTGCTCTTTAACTCAGTCATCTATGCTGCACATGTCAGGCGACATTGTAGACAAGGAAAAAATATCTAGGTGTCTCCAAACTCTCCAAAGCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTCGAAGCCCTGATATTCTATTCGACCAAGTGATTGCATTAGCCAATGAAGCAAAGTGCTCGCTAAAGCAAATCCCTGGAATCTCAGTGCTTGATAATTCAAGCTTTCCGAACTTTCCTGCATTTGATCCATTGCGGCTTACTATAGGTTTTTGGGAGCTTGGTATTTCAGGTTACAAAGCAAATGAAGTCTTATGCAGGGATTTCGGAATCGTCCGTGAACTTGTTGGGAATAAATCTATCACTTATGTACTTAATCTTGGAACTTGCAGAGACCATGTCCAAAGGCTTATATCAGGAGTGAAGTATTTAGCTGCAACATGTTCTACTATTCAGCAATCTAAAGACAGGTTGCTTACTGATCATGCACCCTTTGATGATATAATCATGAGGTTGACCCCTAGAGATGCTTTTTTTGCAAGTAAAAGAAAAGTAACAGTGAAGGAGAGCATCGGTAAGGTTTCGGGGGAACTTATATGTCCATACCCTCCAGGCATACCAGTATTGATCCCTGGCGAGGTTATTACTGAGAGAGCTGTGGATTATCTACTCAATGTAAGAAGTAAAGGTGCTGATATTACTGGAGCATCTAACCCCTTACTTTCTTCTATAGTTGTCTGCAATGTAGCTGATGAGAACTATTAG 1746 0.4192 MVYAASLSLSSFQLPLSHAFSPKRPKCFQFSEFSNKYNSRPLPMILSCCSQEGSTAVQEYGQDESNGTVNNGSITNNTVLCSNSPELQKKSQPPLVSALKASAEVNAASFHFPGHNRGHAAPASLTRLIGIRPYAHDLSSIPELDNLFCPQGPILEAQEEAAKLFGSSETWFLVNGTTCGVHAAIMATCSPGEFLILPRNCHLSAISALVLSGALPKYIVPDYKNDWDIAGGVTPLQVLNTIQELESEGKKAAAVFITSPTYHGVCSNLSDISELCHTRKIPLIVDEAHGAHLGFHSKLPSSALQQGADLVVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQSTSPSYLLLASLDAARAQLSRSPDILFDQVIALANEAKCSLKQIPGISVLDNSSFPNFPAFDPLRLTIGFWELGISGYKANEVLCRDFGIVRELVGNKSITYVLNLGTCRDHVQRLISGVKYLAATCSTIQQSKDRLLTDHAPFDDIIMRLTPRDAFFASKRKVTVKESIGKVSGELICPYPPGIPVLIPGEVITERAVDYLLNVRSKGADITGASNPLLSSIVVCNVADENY 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02291 581 Pfam Orn/Lys/Arg decarboxylase, major domain 93 392 IPR000310 GO:0003824
Tsu02g02291 581 Gene3D - 475 576 - -
Tsu02g02291 581 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 497 556 IPR008286 GO:0003824
Tsu02g02291 581 PANTHER ARGININE DECARBOXYLASE 69 575 - -
Tsu02g02291 581 PANTHER ARGININE DECARBOXYLASE 69 575 - -
Tsu02g02291 581 CDD Orn_deC_like 94 386 IPR000310 GO:0003824
Tsu02g02291 581 Gene3D - 93 371 IPR015421 GO:0003824
Tsu02g02291 581 SUPERFAMILY Ornithine decarboxylase C-terminal domain 432 575 IPR036633 GO:0003824
Tsu02g02291 581 SUPERFAMILY PLP-dependent transferases 93 466 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02291 Tsu-Chr2 23194071 23197847 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02291 - - mtr:MTR_4g068240 920.998