Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02278 ATGGGTGTCAACGACGCCGATCAATCTCACAAACCTCACAGGGAACGTCAAGCCGGTCCCAAGAAAAAGACGAACAAGCCTAAGAAGAAACACCATGGCGATGACGATAACGAAGGTGGTCAGATTATGCAAAACCCTAAAGCTTTTGCATATTCTTCAtcgacaaaaaataaaagattgcaAGCACGCACCGCTGAGAAAGAACAACGCCGTCTTCATGTTCCTATTATTGATCGTAGTTACGGTGAACCTCCTccttttgttattgttgttcaGGGTCCTCCTCAGGTTGGGAAATCACTTTTGATTAAGTCTTTGGTTAAGCATTATACAAAGCATAACTTGCCTGAAGTTCGTGGTCCACTTACAATTGTATCAGGAAAGCAAAGGCGGTTGCAATTTGTGGAATGTCCAAACGATATCAATGGAATGATAGATGCAGCTAAGTATGCTGATCTAGCACTTCTTCTTATAGATGGAAGTTATGGTTTTGAAATGGAAACATTTGAGTTTCTTAATATTTTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTTACTCATCTTGATCATTTCAAGGATGTTAAAAAGTTGAGGAAAACGAAACAACGGCTCAAACACCGATTTTGGACCGAAATATATGATGGAGCTAAATTGTTTTACTTATCAGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTCATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCCTATGTGTTGGTGGATCGTTTTGAAGATATCACTCCTCCTGAACAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACACTTTATGGCTATCTTAGAGGTTGTAATTTGAAAAGTGGCAATAAGGTCCACATAGCTGGAGTGGGTGATTATAGTTTAGCTCATGCAACTGGTTTACCTGATCCATGCCCTCTTCCATCTGCTGCCAAAAAGAAAGGACTGCGTGATAAAGAAAAGTTGTTTTATGCTCCCATGTCTGGCGTTGGGGATCTTTTGTACGATAAAGATGCTGTGTACATAAACATTAATGATCACTTTGTTCAATTTTCAAGAGTTGATGATGGAAACTCTGCTATGACGAACCAAGGAAATGAAAGGGATGTAGGGGAGGTGTTGGTGAGATCTCTTCAGAATACCAAATACTCAATCAATGAAAAGCTAGAGAATagctttatcaatttttttagcaGTGATGCACCAGGTACAAACAATGATGTAGAGCAGGATGGAAATCTGGAAACTCAGCCTGTAGCTGGTATGGGTGGTGAAGATAATAATGAAATGGATTCAAATGGTTCAGAATCGTCTGATGACGATGAGGTCCATGGTCCTGATGTTGATGGCGATGCTAGTAAAGCTACAGATAGTAACCACTTAAATGAACAGATTGAGTTTCACAATGGAAGACGAAGGAGAAAAGCAATCTTTGGAAATGATGTTGATCAAAGTGATCTGGTGgattcagaagatgaagaagtggAAGAGGATGGGGAATCTTCAGATTCAGAATCTTCCGATTCAGAATCTTCAAAAGAGGCTGAAGATGACAACGATGATGATGACACGGATGAAGATGACAAGGGAAATGTTTCGAAGTGGAAGGAGTCGTTGGCTGAAAGAACTCTCGCGCGAAAACCTACCAGTTTGATGCAAGTGGTGTATAATAATTCAACCTCTATGGATGAAGAGAATGATAGTGATGAGGAAACTGGTGACTTTTTCTTCCCAAAAGAAGAACAAATGAAAAAGAAAAATAGTAGAGATGGACCGGATGATACAATGGTTGATGCTGAGGATTGTTCCAAGTGTGCCAAGCTTATGAGCCAGAAATGGAATGAGAAAGATAACGAGGAGATTCGCAACCGTTTTGTGTCTGGAAATTTGGCAAAAGCTGCACTCAGAAATTCACagattgaagatgaagatgtcGATGGTGACTTTGAAGATATAGAAAATTTAGAAACAGGAGAAAATGTTAAGATTTATCTGACAGATAATGTGACAACAACACAGATGGGAGTTGATTTAGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCTCCATGCAAATTTTGTTTCTCAATATAATGGTGACCCTGGGACACCAGAGGAAGAtgctgaaaatgaaaatgaagccAAGATTCATCGTGATCAACCCAATGAAAGTAACTATTTTGACAAGTTAAAAGAGGAGATTGAGcttcaaaaacaaaagaatattgCTGAACTGAACGATCTTGATGAGGATACACGATTAGAGTTAGAAGGCTTCCGAACCGGGACATACCTACGATTGGAGGTTCATAATGTTCCCTATGAAATGGTTGAACACTTTGATCCCTGCCATCCAATATTGGTTGGAGGGGTTGGTTTAGGTGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCATAGGTGGCACAAGAAAGTCCTGAAGACTAGAGATCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATCGAGGATCACAATGGAAGGCATCGAATGCTAAAATACACTCCAGAGCACATGCATTGCCTTGCTATGTTTTGGGGCCCACTTGCACCTCCCAACACTGGAATAGTTGCTGTTCAGACTTTATCAAACAATCAGGCAACTTTTAGGATTACTGCAACTGCGGTTGTTGTCGAGTTTAATCACGCTGCAAAGATagtgaagaaaatcaaattggttGGCTATCCGTGCAAGATATTCAAGAAAACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGGGCAGCTATTCGAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGTTGCAAAAGAAGAGTTAGGTAACAAGCCACAAAGGAAGGGTGGGCAAATCAAAGGGGGGATTGCTAGATGCACTTTTGAAGACAAAATTCTGATGAGCGACGTTGTTTTCCTGCGAGCATGGACTGAAGTTGAAGTTCCTCAGTTTTATAATCCACTGACAACAGCATTGCAGCCACGCGACCAGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGATCACAATCTTCCTATACCTGTAAacaaagattctctttacaagAAAATTGAAAGGAAACGTAGAAAGTTCAATTCATTGGTGATTCCCAAGTCTGTACTGGCAAATCTTCCCTTTGAATCAAAACCTAAACATCCACCCAAGCAAAAAAGGCCTACGCTTGAAAAGAAAAGGCAAATTGGTGTTATTGTTGATCCCCATGAGCAGAAAGTTCGTGCTCTTGTTCAACATTTACAGTTACTGCAAAATGACAAGAGCAAAAAACGTAAACTTacggaaaaggaaaagaaaaaagcttgggaagaaaagaaaaagaaagaggagGAGTTGTCGAAAAAGCGCAAGAGAGAGGAAAGACGAGAGAAATACCGGAAAGAAGACAAGCTCAATAAGAAAAGTCGGAGAGCATAG 3543 0.3836 MGVNDADQSHKPHRERQAGPKKKTNKPKKKHHGDDDNEGGQIMQNPKAFAYSSSTKNKRLQARTAEKEQRRLHVPIIDRSYGEPPPFVIVVQGPPQVGKSLLIKSLVKHYTKHNLPEVRGPLTIVSGKQRRLQFVECPNDINGMIDAAKYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDHFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEQVHANNKCDRKVTLYGYLRGCNLKSGNKVHIAGVGDYSLAHATGLPDPCPLPSAAKKKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSRVDDGNSAMTNQGNERDVGEVLVRSLQNTKYSINEKLENSFINFFSSDAPGTNNDVEQDGNLETQPVAGMGGEDNNEMDSNGSESSDDDEVHGPDVDGDASKATDSNHLNEQIEFHNGRRRRKAIFGNDVDQSDLVDSEDEEVEEDGESSDSESSDSESSKEAEDDNDDDDTDEDDKGNVSKWKESLAERTLARKPTSLMQVVYNNSTSMDEENDSDEETGDFFFPKEEQMKKKNSRDGPDDTMVDAEDCSKCAKLMSQKWNEKDNEEIRNRFVSGNLAKAALRNSQIEDEDVDGDFEDIENLETGENVKIYLTDNVTTTQMGVDLEAEERRLKKLALHANFVSQYNGDPGTPEEDAENENEAKIHRDQPNESNYFDKLKEEIELQKQKNIAELNDLDEDTRLELEGFRTGTYLRLEVHNVPYEMVEHFDPCHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQTLSNNQATFRITATAVVVEFNHAAKIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKEELGNKPQRKGGQIKGGIARCTFEDKILMSDVVFLRAWTEVEVPQFYNPLTTALQPRDQTWKGMRTVAELRRDHNLPIPVNKDSLYKKIERKRRKFNSLVIPKSVLANLPFESKPKHPPKQKRPTLEKKRQIGVIVDPHEQKVRALVQHLQLLQNDKSKKRKLTEKEKKKAWEEKKKKEEELSKKRKREERREKYRKEDKLNKKSRRA 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02278 1180 SMART DUF663_2 684 1013 IPR007034 -
Tsu02g02278 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 223 IPR027417 -
Tsu02g02278 1180 Coils Coil 748 768 - -
Tsu02g02278 1180 Pfam AARP2CN (NUC121) domain 235 320 IPR012948 GO:0005634|GO:0042254
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 418 614 - -
Tsu02g02278 1180 Gene3D - 87 249 IPR027417 -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 725 741 - -
Tsu02g02278 1180 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 249 IPR030387 -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 453 472 - -
Tsu02g02278 1180 SMART aarp2cn2 235 321 IPR012948 GO:0005634|GO:0042254
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 1127 1180 - -
Tsu02g02278 1180 PANTHER RIBOSOME BIOGENESIS PROTEIN 8 1173 IPR039761 GO:0042254
Tsu02g02278 1180 CDD BMS1 48 277 IPR037875 GO:0005525
Tsu02g02278 1180 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 695 1014 IPR007034 -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 1082 1106 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 712 741 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 544 559 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 1 69 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 588 614 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 1087 1106 - -
Tsu02g02278 1180 PANTHER BNAC08G44910D PROTEIN 8 1173 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 1127 1172 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 480 496 - -
Tsu02g02278 1180 Coils Coil 1134 1170 - -
Tsu02g02278 1180 MobiDBLite consensus disorder prediction 501 543 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02278 K14569 - gmx:100792176 1649.03