Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02270 ATGGAAAATCTCATTCGTTCAAAGGAGTTGTGGTCTTTGATTGATGTGGGAGTTACGGTGGCTCCGGCAAATGCAACTGTCGAACAACAACAAGTGGCTGATGctagaaaattcaaagatttgAAGGTGAAAAATTATCTGTTTCAATCTATTGATCGATTCATTCTTGAAACGATTCTTGTTTGTGAAACATCCAAAGATATTTGGGATGCAATGAAGAGAAAATACCAAGGCTCAACGAAGGTGAAGAGAGCTCATCTTCAAGCTCTTAGGCGTGAATTTGAAATTCTTGCCATAGCAAGCCTTGAAGGTGTCAAACTAACAAATGGTAGTAGAGGTTTAGGGAGGGGTAGAGGTAGAAACTCTACCAATGGAGCACGAGGTCGTGGCAGAGGAAGGCAAAGCAAAGAGCTTGTGAGATGCTTCAAATGTCACAAACTTGGACATTACCAGAGTGAATGCCCTGAATGGGAAGGTAATACTCACTATGCCTCTtacaatgatgatgaagaaatgttgtTAATGGCTAAAACTGATCTAGAATTAAATAGTAAGAATGAAGCTTTCTATTTAGGTTCGGGTTGCAGTAATCATATGATAGGTCAAAAGGAATGgttcttcaatttttataatgaCTATAGTGACTCAGTGTTAGGAGGTGATTCAAGAATGACTGTCATGGGGAAAGGTGTGAGTGAAGAATCAAAAGCCTATAAGCTCTATGATCTCATTGATAAGAATATCATCATCAGCAAGGATGTAATCTTTGATGAATCAAAGAGTTGGAATTGGGAGAATTCAAATCAACAAACCAATAGTAATGACATTTGGGAACAAGTTAGTGACAACAACTCAGTTCAACATAACACAGTTGAAGTAAATGTTGAAGCTGAAAACCAGATAAATGAAAATGTGGTCATAGAAGACACATCTAGTGAAAGTGAAAATGAAGGAGGACACCTCAACCACTCCACTCTCTTTAAAGCCACTCATGCGATGGGAATCACAACTCATCTTGTTAAgcttttgcttttctttttaatcactTTTCATTCCTCCTTTGCAGAAGTCTTTTTTGAAGAGACATTCCAAGatggatggaagagtcGTTGGGTGTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCAGGTACTTTTAAGTATACAGCTGGAAAATGGCCTGGTGATCCTGATGACAAAGGTATTCAGACATATAATGATGCCAAGCATTTTGCTATATCCGCAAAGATACCAGAGTTGACTAATAAGAACCGAACCCTGGTTGTTCAGTACTCTATTAAATTTGAGCAGGATATTGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCAGATTTATGTGGCACACAAACAAAGAAGCTCCATGTTATACTGTCATACCAAGGGCAGAACTATCCTATTAGAAAGGATCTGGAGTGTCAAACAGACAAATTAACTCATTTCTATACATTCATTCTAAGGCCTGATGCCTCATATAGTGTTCTTGTCGATAATCGAGAAAGAGATTCGGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTTAAAGCAAAAAAGCCAGCAGATTGGGACGATAGAGAGTACATTGAGGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCGAGCTGAAATTCCGGATCCAAAAGCCAAGAAGCCTGTTGACTgggatgatgaagatgatggacTATGGAAGCCCCCCAAAGTTCCTAATCCAGCATACAAAGGACCGTGGAAACGAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGTTGAAACCGATAAAGTATGTAGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTATGACAACATCTTAATTTGTGATGATCCACAGTATGCAAAGCAAGTTGTGGAAGAATTTATGGTTAATAATAGAGAGGCTGAAAACGAAGCTTTTGAAGAagcagaaaaagaaagaagggcTCAAGAAGAAAAGGAGGCACAAAGGGCAAGAGAAGAGGGAGAAAGGAGGAGGAGAGAGAGGGGCAGTAGATATGGAGATAAGAGGCGCCGTAGAAGGCCGGATCCCCACGAATACGACGATTATGAACATGATGAGCTTTGA 2253 0.3768 MENLIRSKELWSLIDVGVTVAPANATVEQQQVADARKFKDLKVKNYLFQSIDRFILETILVCETSKDIWDAMKRKYQGSTKVKRAHLQALRREFEILAIASLEGVKLTNGSRGLGRGRGRNSTNGARGRGRGRQSKELVRCFKCHKLGHYQSECPEWEGNTHYASYNDDEEMLLMAKTDLELNSKNEAFYLGSGCSNHMIGQKEWFFNFYNDYSDSVLGGDSRMTVMGKGVSEESKAYKLYDLIDKNIIISKDVIFDESKSWNWENSNQQTNSNDIWEQVSDNNSVQHNTVEVNVEAENQINENVVIEDTSSESENEGGHLNHSTLFKATHAMGITTHLVKLLLFFLITFHSSFAEVFFEETFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFAISAKIPELTNKNRTLVVQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLECQTDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIRAEIPDPKAKKPVDWDDEDDGLWKPPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQVVEEFMVNNREAENEAFEEAEKERRAQEEKEAQRAREEGERRRRERGSRYGDKRRRRRPDPHEYDDYEHDEL 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02270 750 MobiDBLite consensus disorder prediction 113 132 - -
Tsu02g02270 750 Gene3D Calreticulin/calnexin, P domain 530 650 IPR009033 GO:0005509|GO:0005515
Tsu02g02270 750 SUPERFAMILY P-domain of calnexin/calreticulin 537 652 IPR009033 GO:0005509|GO:0005515
Tsu02g02270 750 SUPERFAMILY Concanavalin A-like lectins/glucanases 352 554 IPR013320 -
Tsu02g02270 750 Gene3D - 114 164 - -
Tsu02g02270 750 PANTHER CALRETICULIN-3 339 750 - -
Tsu02g02270 750 ProSiteProfiles Zinc finger CCHC-type profile. 140 156 IPR001878 GO:0003676|GO:0008270
Tsu02g02270 750 MobiDBLite consensus disorder prediction 559 604 - -
Tsu02g02270 750 MobiDBLite consensus disorder prediction 559 599 - -
Tsu02g02270 750 PANTHER CALRETICULIN AND CALNEXIN 339 750 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 Pfam Calreticulin family 596 669 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 Pfam Calreticulin family 359 593 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 ProSitePatterns Calreticulin family signature 2. 466 474 IPR018124 GO:0005509
Tsu02g02270 750 MobiDBLite consensus disorder prediction 691 750 - -
Tsu02g02270 750 Gene3D - 356 711 - -
Tsu02g02270 750 SUPERFAMILY Retrovirus zinc finger-like domains 122 160 IPR036875 GO:0003676|GO:0008270
Tsu02g02270 750 ProSitePatterns Calreticulin family signature 1. 434 449 IPR018124 GO:0005509
Tsu02g02270 750 Coils Coil 681 723 - -
Tsu02g02270 750 PRINTS Calreticulin signature 436 454 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 PRINTS Calreticulin signature 579 601 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 PRINTS Calreticulin signature 650 670 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 PRINTS Calreticulin signature 462 478 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 PRINTS Calreticulin signature 551 564 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 PRINTS Calreticulin signature 617 636 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g02270 750 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Tsu02g02270 750 MobiDBLite consensus disorder prediction 691 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02270 Tsu-Chr2 22873134 22883807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02270 340 677 Miscellaneous Gene Families AT5G61790 34.010 6.22e-60 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02270 K08057 - gmx:100802428 708.368