Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02260 ATGGATTTAGAATCGGTTGGAGATTTAGCGattcatttgattttggaaaatcTGAAACCCGAAGACATTGCAAATATTTCATGTGTCAGTAACAGGTTTAGGTCTTTCACTTCCGATGACACTATTTGGTCCAAAATCTGCTTCAATGAACTTTCTCTTACTCAACCCATTGATCATGGTGGAAACCTTCTTCCTTCCTTCAAGGAAGCTTATAGAACTTGGCGAGAAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGTTGGGACAATATAGAAACCTGGCTCGCCAATAATTTTCCAGAAGCTAAGGAGACTCTTTGTGAAGGTGCAACAGAAGCTGAGATTCAAGAGTTGGAGGATGTCTTGAATGTTAAATTGCCTCTTCCTACAAGGATCCTTTACCGCTTACATAATGGGCAAGAGATTGAAAAACTAGATGTCGATACCTCTACCGACGCATTTGGCACTTCTTTGGGAATAATTGGCGGTTACTCCTTCTATGATCATTTGGTGAATGTTTATTTATTACCTATAAGTCATGTAATTGAAGAAACCCAGCAAATTACAAACAACTTGGGGTTTTTAAGAAGATCCAAGTACGTTCTTGTGGCTGCTTCGTCCACGTACTCTGAGAAGCTGTTTTTCCTCAACTGCACCAATGGTCAACTATATGTTGGAACCAAGGAGCTTCTTACCAATAGAGATATGATGCCATGCGTTCCTCGTAATCTGATTAGTTTGGATCGTGAGTTGGATGGCGAAAACATACAGGATGGCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTACAACGTGGCTTTATCAAACTGATCGAAGATGGAAAGGCCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAACTGCTGTAACCAATGGTGTGCAGGTTCGCGCCTCTGCGTTGGTTATCCCTGAGTTGACTGATCTTCAAGAGGGCCGTCAGAAGTACTTATTTTCTTATTCAATCCGTTTGTCCTTGCAACCTCAAGGATGTGTGATCAATGGAATATCCCACAAATCTTGCCAGCTTTATTGGAGGCACTGGCTCATCCATGCTAATGATGTTTTAGTATCTGATGTCGATGGAGAAGCAGTTATAGGAATGTACCCAATTTTGCGTCCAGGTGATAAAGAATTTGTTTATCAGAGTTGCGCAGCTATACTGACGTCATCAGGTTCCGTTGAAGGTTCCTTTACCTTTGTACCAGGAAgACTGGTAGAACCAAGAGGAGATCCTTTCATAGCTGCAGTTGCACGTTTCCCTCTCCAGCGGCCAGACTATATTTTCTGA 1338 0.4133 MDLESVGDLAIHLILENLKPEDIANISCVSNRFRSFTSDDTIWSKICFNELSLTQPIDHGGNLLPSFKEAYRTWREAFVMYPWSLVKRVKRCWDNIETWLANNFPEAKETLCEGATEAEIQELEDVLNVKLPLPTRILYRLHNGQEIEKLDVDTSTDAFGTSLGIIGGYSFYDHLVNVYLLPISHVIEETQQITNNLGFLRRSKYVLVAASSTYSEKLFFLNCTNGQLYVGTKELLTNRDMMPCVPRNLISLDRELDGENIQDGMLLWLEEHGRRLQRGFIKLIEDGKAKSINLFPEEPPLCSTAVTNGVQVRASALVIPELTDLQEGRQKYLFSYSIRLSLQPQGCVINGISHKSCQLYWRHWLIHANDVLVSDVDGEAVIGMYPILRPGDKEFVYQSCAAILTSSGSVEGSFTFVPGRLVEPRGDPFIAAVARFPLQRPDYIF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02260 445 Pfam ApaG domain 326 417 IPR007474 -
Tsu02g02260 445 SUPERFAMILY SMI1/KNR4-like 92 223 IPR037883 -
Tsu02g02260 445 SUPERFAMILY ApaG-like 306 445 IPR036767 -
Tsu02g02260 445 PANTHER F-BOX PROTEIN SKIP16 1 445 - -
Tsu02g02260 445 ProSiteProfiles ApaG domain profile. 304 445 IPR007474 -
Tsu02g02260 445 Gene3D - 6 92 - -
Tsu02g02260 445 Pfam SMI1 / KNR4 family (SUKH-1) 114 172 IPR018958 -
Tsu02g02260 445 Pfam F-box-like 13 48 IPR001810 GO:0005515
Tsu02g02260 445 SUPERFAMILY F-box domain 11 79 IPR036047 GO:0005515
Tsu02g02260 445 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
Tsu02g02260 445 Gene3D ApaG domain 302 444 IPR036767 -
Tsu02g02260 445 Gene3D - 93 234 IPR037883 -
Tsu02g02260 445 PANTHER F-BOX PROTEIN SKIP16 1 445 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02260 K10290 - gmx:100809876 673.7